-
Microprotein-Derived Secreted Peptide That Stimulates Cellular cAMP Production. Biochemistry. 2026 Feb 17; 65(4):429-439. Vaughan JM, Pai VJ, Miller B, Vieira de Souza E, Donaldson CJ, Saghatelian A. PMID: 41637552.
-
Translon: a single term for translated regions. Nat Methods. 2025 Oct; 22(10):2002-2006. Swirski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretic P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szczesny RJ, Tamm T, Tchórzewski M, Topisirovic I, Tremblay ML, Tuller T, Ulitsky I, Valášek LS, Van Damme P, Viero G, Vizcaino JA, Vogel C, Wallace EWJ, Weissman JS, Westhof E, Whiffin N, Wilson DN, Xie Z, Yewdell JW, Yordanova MM, Yu CH, Yurchenko V, Zagrovic B, TRANSLACORE, Valen E, Baranov PV. PMID: 40890551.
-
Abnormal mitochondrial structure and function in brown adipose tissue of SLC35A4-MP knockout mice. Sci Adv. 2025 Aug 29; 11(35):eads7381. Rocha AL, Schmedt C, Perkins G, Pinto A, Diedrich JK, Shan H, Plucinska K, Vieira de Souza E, Vaughan JM, Foster M, Sampath SC, Sampath SC, Cohen P, Ellisman MH, Saghatelian A. PMID: 40880489; PMCID: PMC12396333.
-
CRISPR-Cas9 screening reveals microproteins regulating adipocyte proliferation and lipid metabolism. Proc Natl Acad Sci U S A. 2025 Aug 12; 122(32):e2506534122. Pai VJ, Shan H, Donaldson CJ, Vaughan JM, De Souza EV, O'Connor C, Liem M, Pinto AFM, Diedrich J, Saghatelian A. PMID: 40773238; PMCID: PMC12358916.
-
ShortStop: a machine learning framework for microprotein discovery. BMC Methods. 2025; 2(1):16. Miller B, de Souza EV, Pai VJ, Kim H, Vaughan JM, Lau CJ, Diedrich JK, Saghatelian A. PMID: 40756675; PMCID: PMC12313729.
-
The ERVK3-1 Microprotein Interacts with the HUSH Complex. Biochemistry. 2025 Aug 05; 64(15):3372-3381. Jayatissa A, Jaunbocus N, Erkalo B, Jiang K, Zheng SJ, Su H, Yan L, Choi JY, Vaughan J, Bacchiocchi A, Na Z, Cao X, Halaban R, Saghatelian A, Craft J, Chen YG, Slavoff SA. PMID: 40699144; PMCID: PMC12339190.
-
CRISPR-Cas9 Screening Reveals Microproteins Regulating Adipocyte Proliferation and Lipid Metabolism. bioRxiv. 2025 Mar 25. Pai VJ, Shan H, Donaldson C, Vaughan J, O'Connor C, Liem M, Pinto A, Diedrich J, Saghatelian A. PMID: 40196549; PMCID: PMC11974709.
-
Identification of microproteins with transactivation activity by polyalanine motif selection. RSC Chem Biol. 2025 May 08; 6(5):800-808. Agrawal A, Saghatelian A. PMID: 40083654; PMCID: PMC11898273.
-
"Shunt-ing" down obesity with novel endogenous metabolites. Cell Metab. 2025 Mar 04; 37(3):564-565. Pai VJ, Saghatelian A. PMID: 40043688; PMCID: PMC12687471.
-
The measurement, regulation and biological activity of FAHFAs. Nat Chem Biol. 2025 Jun; 21(6):796-806. Tan D, Saghatelian A. PMID: 39875587; PMCID: PMC12767370.
-
Large-scale proteogenomics characterization of microproteins in Mycobacterium tuberculosis. Sci Rep. 2024 12 28; 14(1):31186. de Souza EV, Dalberto PF, Miranda AC, Saghatelian A, Pinto AM, Basso LA, Machado P, Bizarro CV. PMID: 39732784; PMCID: PMC11682046.
-
Acute inflammation upregulates FAHFAs in adipose tissue and in differentiated adipocytes. J Biol Chem. 2024 12; 300(12):107972. Ertunc ME, Konduri S, Ma Z, Pinto AFM, Donaldson CJ, Momper J, Siegel D, Saghatelian A. PMID: 39510180; PMCID: PMC11647607.
-
Microprotein-encoding RNA regulation in cells treated with pro-inflammatory and pro-fibrotic stimuli. BMC Genomics. 2024 Nov 05; 25(1):1034. Pai VJ, Lau CJ, Garcia-Ruiz A, Donaldson C, Vaughan JM, Miller B, De Souza EV, Pinto AM, Diedrich J, Gavva NR, Yu S, DeBoever C, Horman SR, Saghatelian A. PMID: 39497054; PMCID: PMC11536906.
-
Dual quorum-sensing control of purine biosynthesis drives pathogenic fitness of Enterococcus faecalis. bioRxiv. 2024 Aug 13. Zlitni S, Bowden S, Sberro H, Torres MDT, Vaughan JM, Pinto AFM, Pinto Y, Fernandez D, Röst H, Saghatelian A, de la Fuente-Nunez C, Bhatt AS. PMID: 39185165; PMCID: PMC11343167.
-
Rp3: Ribosome profiling-assisted proteogenomics improves coverage and confidence during microprotein discovery. Nat Commun. 2024 Aug 09; 15(1):6839. Vieira de Souza E, L Bookout A, Barnes CA, Miller B, Machado P, Basso LA, Bizarro CV, Saghatelian A. PMID: 39122697; PMCID: PMC11316118.
-
Tissue-specific sex-dependent difference in the metabolism of fatty acid esters of hydroxy fatty acids. Biochim Biophys Acta Mol Cell Biol Lipids. 2024 12; 1869(8):159543. Riecan M, Domanska V, Lupu C, Patel M, Vondrackova M, Rossmeisl M, Saghatelian A, Lupu F, Kuda O. PMID: 39097081.
-
Time-Restricted Feeding Reduces Atherosclerosis in LDLR KO Mice but Not in ApoE Knockout Mice. Arterioscler Thromb Vasc Biol. 2024 09; 44(9):2069-2087. Chaix A, Lin T, Ramms B, Cutler RG, Le T, Lopez C, Miu P, Pinto AFM, Saghatelian A, Playford MP, Mehta NN, Mattson MP, Gordts P, Witztum JL, Panda S. PMID: 39087348; PMCID: PMC11409897.
-
Presynaptic sensor and silencer of peptidergic transmission reveal neuropeptides as primary transmitters in pontine fear circuit. Cell. 2024 Sep 05; 187(18):5102-5117.e16. Kim DI, Park S, Park S, Ye M, Chen JY, Kang SJ, Jhang J, Hunker AC, Zweifel LS, Caron KM, Vaughan JM, Saghatelian A, Palmiter RD, Han S. PMID: 39043179; PMCID: PMC11380597.
-
Inflammation causes insulin resistance in mice via interferon regulatory factor 3 (IRF3)-mediated reduction in FAHFA levels. Nat Commun. 2024 May 30; 15(1):4605. Yan S, Santoro A, Niphakis MJ, Pinto AM, Jacobs CL, Ahmad R, Suciu RM, Fonslow BR, Herbst-Graham RA, Ngo N, Henry CL, Herbst DM, Saghatelian A, Kahn BB, Rosen ED. PMID: 38816388; PMCID: PMC11139994.
-
Urocortin 3 contributes to paracrine inhibition of islet alpha cells in mice. J Endocrinol. 2024 Jun 01; 261(3). Noguchi GM, Castillo VC, Donaldson CJ, Flisher MR, Momen AT, Saghatelian A, Huising MO. PMID: 38593829; PMCID: PMC11095665.
-
An Inner Mitochondrial Membrane Microprotein from the SLC35A4 Upstream ORF Regulates Cellular Metabolism. J Mol Biol. 2024 May 15; 436(10):168559. Rocha AL, Pai V, Perkins G, Chang T, Ma J, De Souza EV, Chu Q, Vaughan JM, Diedrich JK, Ellisman MH, Saghatelian A. PMID: 38580077; PMCID: PMC11292582.
-
A fast-acting lipid checkpoint in G1 prevents mitotic defects. Nat Commun. 2024 Mar 18; 15(1):2441. Köberlin MS, Fan Y, Liu C, Chung M, Pinto AFM, Jackson PK, Saghatelian A, Meyer T. PMID: 38499565; PMCID: PMC10948896.
-
Tissue-specific sex difference in the metabolism of fatty acid esters of hydroxy fatty acids. bioRxiv. 2023 Nov 16. Riecan M, Domanska V, Lupu C, Patel M, Vondrackova M, Rossmeisl M, Saghatelian A, Lupu F, Kuda O. PMID: 38014093; PMCID: PMC10680750.
-
Biochemistry and Protein Interactions of the CYREN Microprotein. Biochemistry. 2023 11 07; 62(21):3050-3060. Xie L, Bowman ME, Louie GV, Zhang C, Ardejani MS, Huang X, Chu Q, Donaldson CJ, Vaughan JM, Shan H, Powers ET, Kelly JW, Lyumkis D, Noel JP, Saghatelian A. PMID: 37813856; PMCID: PMC12060184.
-
The Integration of Proteogenomics and Ribosome Profiling Circumvents Key Limitations to Increase the Coverage and Confidence of Novel Microproteins. bioRxiv. 2023 Oct 02. de Souza EV, Bookout AL, Barnes CA, Miller B, Machado P, Basso LA, Bizarro CV, Saghatelian A. PMID: 37808637; PMCID: PMC10557729.
-
Proteomic discovery of chemical probes that perturb protein complexes in human cells. Mol Cell. 2023 05 18; 83(10):1725-1742.e12. Lazear MR, Remsberg JR, Jaeger MG, Rothamel K, Her HL, DeMeester KE, Njomen E, Hogg SJ, Rahman J, Whitby LR, Won SJ, Schafroth MA, Ogasawara D, Yokoyama M, Lindsey GL, Li H, Germain J, Barbas S, Vaughan J, Hanigan TW, Vartabedian VF, Reinhardt CJ, Dix MM, Koo SJ, Heo I, Teijaro JR, Simon GM, Ghosh B, Abdel-Wahab O, Ahn K, Saghatelian A, Melillo B, Schreiber SL, Yeo GW, Cravatt BF. PMID: 37084731; PMCID: PMC10198961.
-
Correction: Mitochondrial DNA variation in Alzheimer's disease reveals a unique microprotein called SHMOOSE. Mol Psychiatry. 2023 Apr; 28(4):1827. Miller B, Kim SJ, Mehta HH, Cao K, Kumagai H, Thumaty N, Leelaprachakul N, Braniff RG, Jiao H, Vaughan J, Diedrich J, Saghatelian A, Arpawong TE, Crimmins EM, Ertekin-Taner N, Tubi MA, Hare ET, Braskie MN, Décarie-Spain L, Kanoski SE, Grodstein F, Bennett DA, Zhao L, Toga AW, Wan J, Yen K, Cohen P, Alzheimer’s Disease Neuroimaging Initiative. PMID: 36658336.
-
The TINCR ubiquitin-like microprotein is a tumor suppressor in squamous cell carcinoma. Nat Commun. 2023 03 10; 14(1):1328. Morgado-Palacin L, Brown JA, Martinez TF, Garcia-Pedrero JM, Forouhar F, Quinn SA, Reglero C, Vaughan J, Heydary YH, Donaldson C, Rodriguez-Perales S, Allonca E, Granda-Diaz R, Fernandez AF, Fraga MF, Kim AL, Santos-Juanes J, Owens DM, Rodrigo JP, Saghatelian A, Ferrando AA. PMID: 36899004; PMCID: PMC10006087.
-
Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins. Cell Metab. 2023 01 03; 35(1):166-183.e11. Martinez TF, Lyons-Abbott S, Bookout AL, De Souza EV, Donaldson C, Vaughan JM, Lau C, Abramov A, Baquero AF, Baquero K, Friedrich D, Huard J, Davis R, Kim B, Koch T, Mercer AJ, Misquith A, Murray SA, Perry S, Pino LK, Sanford C, Simon A, Zhang Y, Zipp G, Bizarro CV, Shokhirev MN, Whittle AJ, Searle BC, MacCoss MJ, Saghatelian A, Barnes CA. PMID: 36599300; PMCID: PMC9889109.
-
A class of anti-inflammatory lipids decrease with aging in the central nervous system. Nat Chem Biol. 2023 02; 19(2):187-197. Tan D, Konduri S, Erikci Ertunc M, Zhang P, Wang J, Chang T, Pinto AFM, Rocha A, Donaldson CJ, Vaughan JM, Ludwig RG, Willey E, Iyer M, Gray PC, Maher P, Allen NJ, Zuchero JB, Dillin A, Mori MA, Kohama SG, Siegel D, Saghatelian A. PMID: 36266352; PMCID: PMC9898107.
-
Mitochondrial DNA variation in Alzheimer's disease reveals a unique microprotein called SHMOOSE. Mol Psychiatry. 2023 04; 28(4):1813-1826. Miller B, Kim SJ, Mehta HH, Cao K, Kumagai H, Thumaty N, Leelaprachakul N, Braniff RG, Jiao H, Vaughan J, Diedrich J, Saghatelian A, Arpawong TE, Crimmins EM, Ertekin-Taner N, Tubi MA, Hare ET, Braskie MN, Décarie-Spain L, Kanoski SE, Grodstein F, Bennett DA, Zhao L, Toga AW, Wan J, Yen K, Cohen P, Alzheimer’s Disease Neuroimaging Initiative*. PMID: 36127429; PMCID: PMC10027624.
-
Autoantibody mimicry of hormone action at the thyrotropin receptor. Nature. 2022 09; 609(7928):846-853. Faust B, Billesbølle CB, Suomivuori CM, Singh I, Zhang K, Hoppe N, Pinto AFM, Diedrich JK, Muftuoglu Y, Szkudlinski MW, Saghatelian A, Dror RO, Cheng Y, Manglik A. PMID: 35940205; PMCID: PMC9678024.
-
Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes. Cell. 2022 08 18; 185(17):3263-3277.e15. Russell BJ, Brown SD, Siguenza N, Mai I, Saran AR, Lingaraju A, Maissy ES, Dantas Machado AC, Pinto AFM, Sanchez C, Rossitto LA, Miyamoto Y, Richter RA, Ho SB, Eckmann L, Hasty J, Gonzalez DJ, Saghatelian A, Knight R, Zarrinpar A. PMID: 35931082; PMCID: PMC9464905.
-
Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome. Cell Rep. 2022 07 05; 40(1):111008. Dantas Machado AC, Brown SD, Lingaraju A, Sivaganesh V, Martino C, Chaix A, Zhao P, Pinto AFM, Chang MW, Richter RA, Saghatelian A, Saltiel AR, Knight R, Panda S, Zarrinpar A. PMID: 35793637; PMCID: PMC9296000.
-
Standardized annotation of translated open reading frames. Nat Biotechnol. 2022 07; 40(7):994-999. Mudge JM, Ruiz-Orera J, Prensner JR, Brunet MA, Calvet F, Jungreis I, Gonzalez JM, Magrane M, Martinez TF, Schulz JF, Yang YT, Albà MM, Aspden JL, Baranov PV, Bazzini AA, Bruford E, Martin MJ, Calviello L, Carvunis AR, Chen J, Couso JP, Deutsch EW, Flicek P, Frankish A, Gerstein M, Hubner N, Ingolia NT, Kellis M, Menschaert G, Moritz RL, Ohler U, Roucou X, Saghatelian A, Weissman JS, van Heesch S. PMID: 35831657; PMCID: PMC9757701.
-
ATGL is a biosynthetic enzyme for fatty acid esters of hydroxy fatty acids. Nature. 2022 06; 606(7916):968-975. Patel R, Santoro A, Hofer P, Tan D, Oberer M, Nelson AT, Konduri S, Siegel D, Zechner R, Saghatelian A, Kahn BB. PMID: 35676490; PMCID: PMC9242854.
-
µProteInS-a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs. Bioinformatics. 2022 04 28; 38(9):2612-2614. de Souza EV, Dalberto PF, Machado VP, Canedo A, Saghatelian A, Machado P, Basso LA, Bizarro CV. PMID: 35188179.
-
Inhibition of ceramide accumulation in AdipoR1-/- mice increases photoreceptor survival and improves vision. JCI Insight. 2022 02 22; 7(4). Lewandowski D, Foik AT, Smidak R, Choi EH, Zhang J, Hoang T, Tworak A, Suh S, Leinonen H, Dong Z, Pinto AF, Tom E, Luu J, Lee J, Ma X, Bieberich E, Blackshaw S, Saghatelian A, Lyon DC, Skowronska-Krawczyk D, Tabaka M, Palczewski K. PMID: 35015730; PMCID: PMC8876453.
-
FGF1 and insulin control lipolysis by convergent pathways. Cell Metab. 2022 01 04; 34(1):171-183.e6. Sancar G, Liu S, Gasser E, Alvarez JG, Moutos C, Kim K, van Zutphen T, Wang Y, Huddy TF, Ross B, Dai Y, Zepeda D, Collins B, Tilley E, Kolar MJ, Yu RT, Atkins AR, van Dijk TH, Saghatelian A, Jonker JW, Downes M, Evans RM. PMID: 34986332; PMCID: PMC8863067.
-
Distinct biological activities of isomers from several families of branched fatty acid esters of hydroxy fatty acids (FAHFAs). J Lipid Res. 2021; 62:100108. Aryal P, Syed I, Lee J, Patel R, Nelson AT, Siegel D, Saghatelian A, Kahn BB. PMID: 34418413; PMCID: PMC8479484.
-
Nano-scale resolution of native retinal rod disk membranes reveals differences in lipid composition. J Cell Biol. 2021 08 02; 220(8). Sander CL, Sears AE, Pinto AFM, Choi EH, Kahremany S, Gao F, Salom D, Jin H, Pardon E, Suh S, Dong Z, Steyaert J, Saghatelian A, Skowronska-Krawczyk D, Kiser PD, Palczewski K. PMID: 34132745; PMCID: PMC8240855.
-
A short ORF-encoded transcriptional regulator. Proc Natl Acad Sci U S A. 2021 01 26; 118(4). Koh M, Ahmad I, Ko Y, Zhang Y, Martinez TF, Diedrich JK, Chu Q, Moresco JJ, Erb MA, Saghatelian A, Schultz PG, Bollong MJ. PMID: 33468658; PMCID: PMC7848545.
-
Elovl2 Is Required for Robust Visual Function in Zebrafish. Cells. 2020 12 02; 9(12). Dasyani M, Gao F, Xu Q, Van Fossan D, Zhang E, F M Pinto A, Saghatelian A, Skowronska-Krawczyk D, Chao DL. PMID: 33276584; PMCID: PMC7761535.
-
FIT2 is an acyl-coenzyme A diphosphatase crucial for endoplasmic reticulum homeostasis. J Cell Biol. 2020 10 05; 219(10). Becuwe M, Bond LM, Pinto AFM, Boland S, Mejhert N, Elliott SD, Cicconet M, Graham MM, Liu XN, Ilkayeva O, Saghatelian A, Walther TC, Farese RV. PMID: 32915949; PMCID: PMC7659722.
-
Networking in Circulation: Lipoproteins, PM20D1, and N-acyl Amino Acid Bioactivity. Cell Chem Biol. 2020 09 17; 27(9):1112-1113. Saghatelian A. PMID: 32946756.
-
Serine restriction alters sphingolipid diversity to constrain tumour growth. Nature. 2020 10; 586(7831):790-795. Muthusamy T, Cordes T, Handzlik MK, You L, Lim EW, Gengatharan J, Pinto AFM, Badur MG, Kolar MJ, Wallace M, Saghatelian A, Metallo CM. PMID: 32788725; PMCID: PMC7606299.
-
Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis. Nat Biotechnol. 2020 11; 38(11):1288-1297. Chen PB, Black AS, Sobel AL, Zhao Y, Mukherjee P, Molparia B, Moore NE, Aleman Muench GR, Wu J, Chen W, Pinto AFM, Maryanoff BE, Saghatelian A, Soroosh P, Torkamani A, Leman LJ, Ghadiri MR. PMID: 32541956; PMCID: PMC7641989.
-
Antioxidant Effects of N-Acetylcysteine Prevent Programmed Metabolic Disease in Mice. Diabetes. 2020 08; 69(8):1650-1661. Charron MJ, Williams L, Seki Y, Du XQ, Chaurasia B, Saghatelian A, Summers SA, Katz EB, Vuguin PM, Reznik SE. PMID: 32444367; PMCID: PMC7372077.
-
Insights into GLP-1 Receptor Activation with a Nonpeptide Agonist. Biochemistry. 2020 04 28; 59(16):1549-1550. Martinez TF, Vaughan J, Saghatelian A. PMID: 32297516; PMCID: PMC13019462.
-
AIG1 and ADTRP are endogenous hydrolases of fatty acid esters of hydroxy fatty acids (FAHFAs) in mice. J Biol Chem. 2020 05 01; 295(18):5891-5905. Erikci Ertunc M, Kok BP, Parsons WH, Wang JG, Tan D, Donaldson CJ, Pinto AFM, Vaughan JM, Ngo N, Lum KM, Henry CL, Coppola AR, Niphakis MJ, Cravatt BF, Saez E, Saghatelian A. PMID: 32152231; PMCID: PMC7196635.
-
The lipid elongation enzyme ELOVL2 is a molecular regulator of aging in the retina. Aging Cell. 2020 02; 19(2):e13100. Chen D, Chao DL, Rocha L, Kolar M, Nguyen Huu VA, Krawczyk M, Dasyani M, Wang T, Jafari M, Jabari M, Ross KD, Saghatelian A, Hamilton BA, Zhang K, Skowronska-Krawczyk D. PMID: 31943697; PMCID: PMC6996962.
-
Accurate annotation of human protein-coding small open reading frames. Nat Chem Biol. 2020 04; 16(4):458-468. Martinez TF, Chu Q, Donaldson C, Tan D, Shokhirev MN, Saghatelian A. PMID: 31819274; PMCID: PMC7085969.
-
Regulation of the ER stress response by a mitochondrial microprotein. Nat Commun. 2019 10 25; 10(1):4883. Chu Q, Martinez TF, Novak SW, Donaldson CJ, Tan D, Vaughan JM, Chang T, Diedrich JK, Andrade L, Kim A, Zhang T, Manor U, Saghatelian A. PMID: 31653868; PMCID: PMC6814811.
-
PAHSAs enhance hepatic and systemic insulin sensitivity through direct and indirect mechanisms. J Clin Invest. 2019 10 01; 129(10):4138-4150. Zhou P, Santoro A, Peroni OD, Nelson AT, Saghatelian A, Siegel D, Kahn BB. PMID: 31449056; PMCID: PMC6763232.
-
PAHSAs attenuate immune responses and promote β cell survival in autoimmune diabetic mice. J Clin Invest. 2019 08 05; 129(9):3717-3731. Syed I, Rubin de Celis MF, Mohan JF, Moraes-Vieira PM, Vijayakumar A, Nelson AT, Siegel D, Saghatelian A, Mathis D, Kahn BB. PMID: 31380811; PMCID: PMC6715391.
-
Substrate-Selective Enzyme Inhibitors. Trends Pharmacol Sci. 2019 10; 40(10):716-718. Chu Q, Chang T, Saghatelian A. PMID: 31383375.
-
Linoleic acid esters of hydroxy linoleic acids are anti-inflammatory lipids found in plants and mammals. J Biol Chem. 2019 07 05; 294(27):10698-10707. Kolar MJ, Konduri S, Chang T, Wang H, McNerlin C, Ohlsson L, Härröd M, Siegel D, Saghatelian A. PMID: 31152059; PMCID: PMC6615670.
-
Discovery of FAHFA-Containing Triacylglycerols and Their Metabolic Regulation. J Am Chem Soc. 2019 06 05; 141(22):8798-8806. Tan D, Ertunc ME, Konduri S, Zhang J, Pinto AM, Chu Q, Kahn BB, Siegel D, Saghatelian A. PMID: 31056915; PMCID: PMC6662584.
-
Synthesis of chemically edited derivatives of the endogenous regulator of inflammation 9-PAHSA. J Antibiot (Tokyo). 2019 06; 72(6):498-506. Wang H, Chang T, Konduri S, Huang J, Saghatelian A, Siegel D. PMID: 30988370; PMCID: PMC6784544.
-
CDK12 phosphorylates 4E-BP1 to enable mTORC1-dependent translation and mitotic genome stability. Genes Dev. 2019 04 01; 33(7-8):418-435. Choi SH, Martinez TF, Kim S, Donaldson C, Shokhirev MN, Saghatelian A, Jones KA. PMID: 30819820; PMCID: PMC6446539.
-
A Hidden ORF Reveals an Immune Protector. Biochemistry. 2019 02 26; 58(8):1022-1023. Chu Q, Saghatelian A. PMID: 30724555; PMCID: PMC6443401.
-
Genetic Liver-Specific AMPK Activation Protects against Diet-Induced Obesity and NAFLD. Cell Rep. 2019 01 02; 26(1):192-208.e6. Garcia D, Hellberg K, Chaix A, Wallace M, Herzig S, Badur MG, Lin T, Shokhirev MN, Pinto AFM, Ross DS, Saghatelian A, Panda S, Dow LE, Metallo CM, Shaw RJ. PMID: 30605676; PMCID: PMC6344045.
-
Small, but mighty? Searching for human microproteins and their potential for understanding health and disease. Expert Rev Proteomics. 2018 12; 15(12):963-965. Rathore A, Martinez TF, Chu Q, Saghatelian A. PMID: 30415582; PMCID: PMC6497149.
-
Methodological Issues in Studying PAHSA Biology: Masking PAHSA Effects. Cell Metab. 2018 10 02; 28(4):543-546. Syed I, Lee J, Peroni OD, Yore MM, Moraes-Vieira PM, Santoro A, Wellenstein K, Smith U, McGraw TE, Saghatelian A, Kahn BB. PMID: 30244974; PMCID: PMC6542592.
-
MIEF1 Microprotein Regulates Mitochondrial Translation. Biochemistry. 2018 09 25; 57(38):5564-5575. Rathore A, Chu Q, Tan D, Martinez TF, Donaldson CJ, Diedrich JK, Yates JR, Saghatelian A. PMID: 30215512; PMCID: PMC6443411.
-
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. Nat Commun. 2018 07 20; 9(1):2872. Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S. PMID: 30030441; PMCID: PMC6054678.
-
Author Correction: Blocking Zika virus vertical transmission. Sci Rep. 2018 Jun 05; 8(1):8794. Mesci P, Macia A, Moore SM, Shiryaev SA, Pinto A, Huang CT, Tejwani L, Fernandes IR, Suarez NA, Kolar MJ, Montefusco S, Rosenberg SC, Herai RH, Cugola FR, Russo FB, Sheets N, Saghatelian A, Shresta S, Momper JD, Siqueira-Neto JL, Corbett KD, Beltrão-Braga PCB, Terskikh AV, Muotri AR. PMID: 29867187; PMCID: PMC5986756.
-
The influence of transcript assembly on the proteogenomics discovery of microproteins. PLoS One. 2018; 13(3):e0194518. Ma J, Saghatelian A, Shokhirev MN. PMID: 29584760; PMCID: PMC5870951.
-
Faster Protocol for Endogenous Fatty Acid Esters of Hydroxy Fatty Acid (FAHFA) Measurements. Anal Chem. 2018 04 17; 90(8):5358-5365. Kolar MJ, Nelson AT, Chang T, Ertunc ME, Christy MP, Ohlsson L, Härröd M, Kahn BB, Siegel D, Saghatelian A. PMID: 29578702; PMCID: PMC5962352.
-
How many human proteoforms are there? Nat Chem Biol. 2018 02 14; 14(3):206-214. Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, Ivanov AR, Jensen ON, Jewett MC, Kelleher NL, Kiessling LL, Krogan NJ, Larsen MR, Loo JA, Ogorzalek Loo RR, Lundberg E, MacCoss MJ, Mallick P, Mootha VK, Mrksich M, Muir TW, Patrie SM, Pesavento JJ, Pitteri SJ, Rodriguez H, Saghatelian A, Sandoval W, Schlüter H, Sechi S, Slavoff SA, Smith LM, Snyder MP, Thomas PM, Uhlén M, Van Eyk JE, Vidal M, Walt DR, White FM, Williams ER, Wohlschlager T, Wysocki VH, Yates NA, Young NL, Zhang B. PMID: 29443976; PMCID: PMC5837046.
-
Palmitic Acid Hydroxystearic Acids Activate GPR40, Which Is Involved in Their Beneficial Effects on Glucose Homeostasis. Cell Metab. 2018 02 06; 27(2):419-427.e4. Syed I, Lee J, Moraes-Vieira PM, Donaldson CJ, Sontheimer A, Aryal P, Wellenstein K, Kolar MJ, Nelson AT, Siegel D, Mokrosinski J, Farooqi IS, Zhao JJ, Yore MM, Peroni OD, Saghatelian A, Kahn BB. PMID: 29414687; PMCID: PMC5807007.
-
The serine protease HtrA1 contributes to the formation of an extracellular 25-kDa apolipoprotein E fragment that stimulates neuritogenesis. J Biol Chem. 2018 03 16; 293(11):4071-4084. Muñoz SS, Li H, Ruberu K, Chu Q, Saghatelian A, Ooi L, Garner B. PMID: 29414786; PMCID: PMC5857987.
-
Blocking Zika virus vertical transmission. Sci Rep. 2018 01 19; 8(1):1218. Mesci P, Macia A, Moore SM, Shiryaev SA, Pinto A, Huang CT, Tejwani L, Fernandes IR, Suarez NA, Kolar MJ, Montefusco S, Rosenberg SC, Herai RH, Cugola FR, Russo FB, Sheets N, Saghatelian A, Shresta S, Momper JD, Siqueira-Neto JL, Corbett KD, Beltrão-Braga PCB, Terskikh AV, Muotri AR. PMID: 29352135; PMCID: PMC5775359.
-
Pharmacological activation of REV-ERBs is lethal in cancer and oncogene-induced senescence. Nature. 2018 01 18; 553(7688):351-355. Sulli G, Rommel A, Wang X, Kolar MJ, Puca F, Saghatelian A, Plikus MV, Verma IM, Panda S. PMID: 29320480; PMCID: PMC5924733.
-
Novel Biology and Druggable Targets via Chemoproteomics. Biochemistry. 2017 12 19; 56(50):6515-6516. Saghatelian A. PMID: 29214804; PMCID: PMC13036697.
-
Reprogramming pancreatic stellate cells via p53 activation: A putative target for pancreatic cancer therapy. PLoS One. 2017; 12(12):e0189051. Saison-Ridinger M, DelGiorno KE, Zhang T, Kraus A, French R, Jaquish D, Tsui C, Erikson G, Spike BT, Shokhirev MN, Liddle C, Yu RT, Downes M, Evans RM, Saghatelian A, Lowy AM, Wahl GM. PMID: 29211796; PMCID: PMC5718507.
-
Absence of Carbohydrate Response Element Binding Protein in Adipocytes Causes Systemic Insulin Resistance and Impairs Glucose Transport. Cell Rep. 2017 Oct 24; 21(4):1021-1035. Vijayakumar A, Aryal P, Wen J, Syed I, Vazirani RP, Moraes-Vieira PM, Camporez JP, Gallop MR, Perry RJ, Peroni OD, Shulman GI, Saghatelian A, McGraw TE, Kahn BB. PMID: 29069585; PMCID: PMC5771491.
-
Regulation of DNA repair pathway choice in S and G2 phases by the NHEJ inhibitor CYREN. Nature. 2017 09 20; 549(7673):548-552. Arnoult N, Correia A, Ma J, Merlo A, Garcia-Gomez S, Maric M, Tognetti M, Benner CW, Boulton SJ, Saghatelian A, Karlseder J. PMID: 28959974; PMCID: PMC5624508.
-
Identification of Microprotein-Protein Interactions via APEX Tagging. Biochemistry. 2017 07 05; 56(26):3299-3306. Chu Q, Rathore A, Diedrich JK, Donaldson CJ, Yates JR, Saghatelian A. PMID: 28589727; PMCID: PMC5499098.
-
Stereochemistry of Endogenous Palmitic Acid Ester of 9-Hydroxystearic Acid and Relevance of Absolute Configuration to Regulation. J Am Chem Soc. 2017 04 05; 139(13):4943-4947. Nelson AT, Kolar MJ, Chu Q, Syed I, Kahn BB, Saghatelian A, Siegel D. PMID: 28350171; PMCID: PMC5568760.
-
Lipid Osteoclastokines Regulate Breast Cancer Bone Metastasis. Endocrinology. 2017 03 01; 158(3):477-489. Krzeszinski JY, Schwaid AG, Cheng WY, Jin Z, Gallegos ZR, Saghatelian A, Wan Y. PMID: 27967239; PMCID: PMC5460780.
-
Overexpressing the novel autocrine/endocrine adipokine WISP2 induces hyperplasia of the heart, white and brown adipose tissues and prevents insulin resistance. Sci Rep. 2017 02 27; 7:43515. Grünberg JR, Hoffmann JM, Hedjazifar S, Nerstedt A, Jenndahl L, Elvin J, Castellot J, Wei L, Movérare-Skrtic S, Ohlsson C, Holm LM, Bäckhed F, Syed I, Bosch F, Saghatelian A, Kahn BB, Hammarstedt A, Smith U. PMID: 28240264; PMCID: PMC5327486.
-
Metformin Inhibits Hepatic mTORC1 Signaling via Dose-Dependent Mechanisms Involving AMPK and the TSC Complex. Cell Metab. 2017 02 07; 25(2):463-471. Howell JJ, Hellberg K, Turner M, Talbott G, Kolar MJ, Ross DS, Hoxhaj G, Saghatelian A, Shaw RJ, Manning BD. PMID: 28089566; PMCID: PMC5299044.
-
Gpr132 sensing of lactate mediates tumor-macrophage interplay to promote breast cancer metastasis. Proc Natl Acad Sci U S A. 2017 01 17; 114(3):580-585. Chen P, Zuo H, Xiong H, Kolar MJ, Chu Q, Saghatelian A, Siegwart DJ, Wan Y. PMID: 28049847; PMCID: PMC5255630.
-
SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism. Cell Metab. 2017 02 07; 25(2):412-427. Oishi Y, Spann NJ, Link VM, Muse ED, Strid T, Edillor C, Kolar MJ, Matsuzaka T, Hayakawa S, Tao J, Kaikkonen MU, Carlin AF, Lam MT, Manabe I, Shimano H, Saghatelian A, Glass CK. PMID: 28041958; PMCID: PMC5568699.
-
mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide. Nature. 2017 01 12; 541(7636):228-232. Matsumoto A, Pasut A, Matsumoto M, Yamashita R, Fung J, Monteleone E, Saghatelian A, Nakayama KI, Clohessy JG, Pandolfi PP. PMID: 28024296.
-
A human microprotein that interacts with the mRNA decapping complex. Nat Chem Biol. 2017 02; 13(2):174-180. D'Lima NG, Ma J, Winkler L, Chu Q, Loh KH, Corpuz EO, Budnik BA, Lykke-Andersen J, Saghatelian A, Slavoff SA. PMID: 27918561; PMCID: PMC5247292.
-
Glucagon and Thyroid Hormone: A Championship Team. Cell. 2016 Oct 20; 167(3):604-605. Saghatelian A, Cravatt B. PMID: 27768884.
-
Inhibition of acetyl-CoA carboxylase suppresses fatty acid synthesis and tumor growth of non-small-cell lung cancer in preclinical models. Nat Med. 2016 10; 22(10):1108-1119. Svensson RU, Parker SJ, Eichner LJ, Kolar MJ, Wallace M, Brun SN, Lombardo PS, Van Nostrand JL, Hutchins A, Vera L, Gerken L, Greenwood J, Bhat S, Harriman G, Westlin WF, Harwood HJ, Saghatelian A, Kapeller R, Metallo CM, Shaw RJ. PMID: 27643638; PMCID: PMC5053891.
-
Branched Fatty Acid Esters of Hydroxy Fatty Acids (FAHFAs) Protect against Colitis by Regulating Gut Innate and Adaptive Immune Responses. J Biol Chem. 2016 Oct 14; 291(42):22207-22217. Lee J, Moraes-Vieira PM, Castoldi A, Aryal P, Yee EU, Vickers C, Parnas O, Donaldson CJ, Saghatelian A, Kahn BB. PMID: 27573241; PMCID: PMC5064000.
-
Branched Fatty Acid Esters of Hydroxy Fatty Acids Are Preferred Substrates of the MODY8 Protein Carboxyl Ester Lipase. Biochemistry. 2016 08 23; 55(33):4636-41. Kolar MJ, Kamat SS, Parsons WH, Homan EA, Maher T, Peroni OD, Syed I, Fjeld K, Molven A, Kahn BB, Cravatt BF, Saghatelian A. PMID: 27509211; PMCID: PMC5056623.
-
Revealing disease-associated pathways by network integration of untargeted metabolomics. Nat Methods. 2016 09; 13(9):770-6. Pirhaji L, Milani P, Leidl M, Curran T, Avila-Pacheco J, Clish CB, White FM, Saghatelian A, Fraenkel E. PMID: 27479327; PMCID: PMC5209295.
-
HtrA1 Proteolysis of ApoE In Vitro Is Allele Selective. J Am Chem Soc. 2016 08 03; 138(30):9473-8. Chu Q, Diedrich JK, Vaughan JM, Donaldson CJ, Nunn MF, Lee KF, Saghatelian A. PMID: 27379525; PMCID: PMC5063305.
-
GLUT4 Expression in Adipocytes Regulates De Novo Lipogenesis and Levels of a Novel Class of Lipids With Antidiabetic and Anti-inflammatory Effects. Diabetes. 2016 07; 65(7):1808-15. Moraes-Vieira PM, Saghatelian A, Kahn BB. PMID: 27288004; PMCID: PMC4915575.
-
AIG1 and ADTRP are atypical integral membrane hydrolases that degrade bioactive FAHFAs. Nat Chem Biol. 2016 May; 12(5):367-372. Parsons WH, Kolar MJ, Kamat SS, Cognetta AB, Hulce JJ, Saez E, Kahn BB, Saghatelian A, Cravatt BF. PMID: 27018888; PMCID: PMC4837090.
-
Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides. Anal Chem. 2016 Apr 05; 88(7):3967-75. Ma J, Diedrich JK, Jungreis I, Donaldson C, Vaughan J, Kellis M, Yates JR, Saghatelian A. PMID: 27010111; PMCID: PMC4939623.
-
A LC-MS-based workflow for measurement of branched fatty acid esters of hydroxy fatty acids. Nat Protoc. 2016 Apr; 11(4):747-63. Zhang T, Chen S, Syed I, Ståhlman M, Kolar MJ, Homan EA, Chu Q, Smith U, Borén J, Kahn BB, Saghatelian A. PMID: 26985573; PMCID: PMC4797065.
-
Ligand Activation of ERRα by Cholesterol Mediates Statin and Bisphosphonate Effects. Cell Metab. 2016 Mar 08; 23(3):479-91. Wei W, Schwaid AG, Wang X, Wang X, Chen S, Chu Q, Saghatelian A, Wan Y. PMID: 26777690; PMCID: PMC4785078.
-
Editorial overview: Omics: The maturation of chemical biology. Curr Opin Chem Biol. 2016 Feb; 30:v-vi. Saghatelian A, Nomura DK, Weerapana E. PMID: 26739665.
-
Discovery and characterization of smORF-encoded bioactive polypeptides. Nat Chem Biol. 2015 Dec; 11(12):909-16. Saghatelian A, Couso JP. PMID: 26575237; PMCID: PMC4956473.
-
Primate-specific ORF0 contributes to retrotransposon-mediated diversity. Cell. 2015 Oct 22; 163(3):583-93. Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ, Moore L, Hunter T, Saghatelian A, Gage FH. PMID: 26496605.
-
Regulation of mitochondrial ceramide distribution by members of the BCL-2 family. J Lipid Res. 2015 Aug; 56(8):1501-10. Zhang T, Barclay L, Walensky LD, Saghatelian A. PMID: 26059977; PMCID: PMC4513991.
-
Defining the metabolome: size, flux, and regulation. Mol Cell. 2015 May 21; 58(4):699-706. Zamboni N, Saghatelian A, Patti GJ. PMID: 26000853; PMCID: PMC4831058.
-
An alternative pluripotent state confers interspecies chimaeric competency. Nature. 2015 May 21; 521(7552):316-21. Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, Takahashi Y, Aizawa E, Kim NY, Lajara J, Guillen P, Campistol JM, Esteban CR, Ross PJ, Saghatelian A, Ren B, Ecker JR, Izpisua Belmonte JC. PMID: 25945737; PMCID: PMC5278765.
-
Stable isotopic labeling-based quantitative targeted glycomics (i-QTaG). Biotechnol Prog. 2015 May-Jun; 31(3):840-8. Kim KJ, Kim YW, Kim YG, Park HM, Jin JM, Hwan Kim Y, Yang YH, Kyu Lee J, Chung J, Lee SG, Saghatelian A. PMID: 25832445.
-
Identification and characterization of sORF-encoded polypeptides. Crit Rev Biochem Mol Biol. 2015 Mar-Apr; 50(2):134-41. Chu Q, Ma J, Saghatelian A. PMID: 25857697; PMCID: PMC4761265.
-
A nonapoptotic role for BAX and BAK in eicosanoid metabolism. ACS Chem Biol. 2015 Jun 19; 10(6):1398-403. Zhang T, Walensky LD, Saghatelian A. PMID: 25815636; PMCID: PMC4599777.
-
Maternal adiponectin controls milk composition to prevent neonatal inflammation. Endocrinology. 2015 Apr; 156(4):1504-13. Jin Z, Du Y, Schwaid AG, Asterholm IW, Scherer PE, Saghatelian A, Wan Y. PMID: 25590242; PMCID: PMC4399311.
-
Data-driven synthesis of proteolysis-resistant peptide hormones. J Am Chem Soc. 2014 Dec 24; 136(51):17710-3. Prothiwa M, Syed I, Huising MO, van der Meulen T, Donaldson CJ, Trauger SA, Kahn BB, Saghatelian A. PMID: 25496053.
-
Discovery of a class of endogenous mammalian lipids with anti-diabetic and anti-inflammatory effects. Cell. 2014 Oct 09; 159(2):318-32. Yore MM, Syed I, Moraes-Vieira PM, Zhang T, Herman MA, Homan EA, Patel RT, Lee J, Chen S, Peroni OD, Dhaneshwar AS, Hammarstedt A, Smith U, McGraw TE, Saghatelian A, Kahn BB. PMID: 25303528; PMCID: PMC4260972.
-
A potent α/β-peptide analogue of GLP-1 with prolonged action in vivo. J Am Chem Soc. 2014 Sep 17; 136(37):12848-51. Johnson LM, Barrick S, Hager MV, McFedries A, Homan EA, Rabaglia ME, Keller MP, Attie AD, Saghatelian A, Bisello A, Gellman SH. PMID: 25191938; PMCID: PMC4183665.
-
Inhibition of circulating dipeptidyl peptidase 4 activity in patients with metastatic prostate cancer. Mol Cell Proteomics. 2014 Nov; 13(11):3082-96. Nazarian A, Lawlor K, Yi SS, Philip J, Ghosh M, Yaneva M, Villanueva J, Saghatelian A, Assel M, Vickers AJ, Eastham JA, Scher HI, Carver BS, Lilja H, Tempst P. PMID: 25056937; PMCID: PMC4223493.
-
Localization of anionic phospholipids in Escherichia coli cells. J Bacteriol. 2014 Oct; 196(19):3386-98. Oliver PM, Crooks JA, Leidl M, Yoon EJ, Saghatelian A, Weibel DB. PMID: 25002539; PMCID: PMC4187673.
-
Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones. Nature. 2014 Jul 03; 511(7507):94-8. Maianti JP, McFedries A, Foda ZH, Kleiner RE, Du XQ, Leissring MA, Tang WJ, Charron MJ, Seeliger MA, Saghatelian A, Liu DR. PMID: 24847884; PMCID: PMC4142213.
-
The metabolite α-ketoglutarate extends lifespan by inhibiting ATP synthase and TOR. Nature. 2014 Jun 19; 510(7505):397-401. Chin RM, Fu X, Pai MY, Vergnes L, Hwang H, Deng G, Diep S, Lomenick B, Meli VS, Monsalve GC, Hu E, Whelan SA, Wang JX, Jung G, Solis GM, Fazlollahi F, Kaweeteerawat C, Quach A, Nili M, Krall AS, Godwin HA, Chang HR, Faull KF, Guo F, Jiang M, Trauger SA, Saghatelian A, Braas D, Christofk HR, Clarke CF, Teitell MA, Petrascheck M, Reue K, Jung ME, Frand AR, Huang J. PMID: 24828042; PMCID: PMC4263271.
-
A human short open reading frame (sORF)-encoded polypeptide that stimulates DNA end joining. J Biol Chem. 2014 Apr 18; 289(16):10950-10957. Slavoff SA, Heo J, Budnik BA, Hanakahi LA, Saghatelian A. PMID: 24610814; PMCID: PMC4036235.
-
Deletion of PREPl causes growth impairment and hypotonia in mice. PLoS One. 2014; 9(2):e89160. Lone AM, Leidl M, McFedries AK, Horner JW, Creemers J, Saghatelian A. PMID: 24586561; PMCID: PMC3938459.
-
Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue. J Proteome Res. 2014 Mar 07; 13(3):1757-65. Ma J, Ward CC, Jungreis I, Slavoff SA, Schwaid AG, Neveu J, Budnik BA, Kellis M, Saghatelian A. PMID: 24490786; PMCID: PMC3993966.
-
Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science. 2014 Feb 14; 343(6172):1248636. Pauli A, Norris ML, Valen E, Chew GL, Gagnon JA, Zimmerman S, Mitchell A, Ma J, Dubrulle J, Reyon D, Tsai SQ, Joung JK, Saghatelian A, Schier AF. PMID: 24407481; PMCID: PMC4107353.
-
Chemoproteomic discovery of cysteine-containing human short open reading frames. J Am Chem Soc. 2013 Nov 13; 135(45):16750-3. Schwaid AG, Shannon DA, Ma J, Slavoff SA, Levin JZ, Weerapana E, Saghatelian A. PMID: 24152191; PMCID: PMC3868496.
-
A diurnal serum lipid integrates hepatic lipogenesis and peripheral fatty acid use. Nature. 2013 Oct 24; 502(7472):550-4. Liu S, Brown JD, Stanya KJ, Homan E, Leidl M, Inouye K, Bhargava P, Gangl MR, Dai L, Hatano B, Hotamisligil GS, Saghatelian A, Plutzky J, Lee CH. PMID: 24153306; PMCID: PMC4141623.
-
MAIT recognition of a stimulatory bacterial antigen bound to MR1. J Immunol. 2013 Nov 15; 191(10):5268-77. López-Sagaseta J, Dulberger CL, McFedries A, Cushman M, Saghatelian A, Adams EJ. PMID: 24108697; PMCID: PMC3819123.
-
Analysis of the proteolysis of bioactive peptides using a peptidomics approach. Nat Protoc. 2013 Sep; 8(9):1730-42. Kim YG, Lone AM, Saghatelian A. PMID: 23949379; PMCID: PMC4170687.
-
Proteolysis controls endogenous substance P levels. PLoS One. 2013; 8(7):e68638. Mitchell AJ, Lone AM, Tinoco AD, Saghatelian A. PMID: 23894327; PMCID: PMC3716696.
-
Endothelial lipase is a critical determinant of high-density lipoprotein-stimulated sphingosine 1-phosphate-dependent signaling in vascular endothelium. Arterioscler Thromb Vasc Biol. 2013 Aug; 33(8):1788-94. Tatematsu S, Francis SA, Natarajan P, Rader DJ, Saghatelian A, Brown JD, Michel T, Plutzky J. PMID: 23723371; PMCID: PMC3794714.
-
Methods for the elucidation of protein-small molecule interactions. Chem Biol. 2013 May 23; 20(5):667-73. McFedries A, Schwaid A, Saghatelian A. PMID: 23706633.
-
Molecular network analysis of phosphotyrosine and lipid metabolism in hepatic PTP1b deletion mice. Integr Biol (Camb). 2013 Jul 24; 5(7):940-63. Miraldi ER, Sharfi H, Friedline RH, Johnson H, Zhang T, Lau KS, Ko HJ, Curran TG, Haigis KM, Yaffe MB, Bonneau R, Lauffenburger DA, Kahn BB, Kim JK, Neel BG, Saghatelian A, White FM. PMID: 23685806; PMCID: PMC3759823.
-
The molecular basis for Mucosal-Associated Invariant T cell recognition of MR1 proteins. Proc Natl Acad Sci U S A. 2013 May 07; 110(19):E1771-8. López-Sagaseta J, Dulberger CL, Crooks JE, Parks CD, Luoma AM, McFedries A, Van Rhijn I, Saghatelian A, Adams EJ. PMID: 23613577; PMCID: PMC3651419.
-
Emerging roles of lipids in BCL-2 family-regulated apoptosis. Biochim Biophys Acta. 2013 Oct; 1831(10):1542-54. Zhang T, Saghatelian A. PMID: 23524027.
-
Peptidomics methods for the identification of peptidase-substrate interactions. Curr Opin Chem Biol. 2013 Feb; 17(1):83-9. Lone AM, Kim YG, Saghatelian A. PMID: 23332665; PMCID: PMC3594040.
-
Identification of Pseudomonas aeruginosa phenazines that kill Caenorhabditis elegans. PLoS Pathog. 2013 Jan; 9(1):e1003101. Cezairliyan B, Vinayavekhin N, Grenfell-Lee D, Yuen GJ, Saghatelian A, Ausubel FM. PMID: 23300454; PMCID: PMC3536714.
-
Peptidomic discovery of short open reading frame-encoded peptides in human cells. Nat Chem Biol. 2013 Jan; 9(1):59-64. Slavoff SA, Mitchell AJ, Schwaid AG, Cabili MN, Ma J, Levin JZ, Karger AD, Budnik BA, Rinn JL, Saghatelian A. PMID: 23160002; PMCID: PMC3625679.
-
Discovering ligand-receptor interactions. Nat Biotechnol. 2012 Oct; 30(10):959-61. Slavoff SA, Saghatelian A. PMID: 23051814.
-
Maternal western diet causes inflammatory milk and TLR2/4-dependent neonatal toxicity. Genes Dev. 2012 Jun 15; 26(12):1306-11. Du Y, Yang M, Lee S, Behrendt CL, Hooper LV, Saghatelian A, Wan Y. PMID: 22713870; PMCID: PMC3387658.
-
Peptidomics approach to elucidate the proteolytic regulation of bioactive peptides. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8523-7. Kim YG, Lone AM, Nolte WM, Saghatelian A. PMID: 22586115; PMCID: PMC3365226.
-
Cytotoxicity of a Ti(IV) compound is independent of serum proteins. Proc Natl Acad Sci U S A. 2012 Mar 27; 109(13):5016-21. Tinoco AD, Thomas HR, Incarvito CD, Saghatelian A, Valentine AM. PMID: 22411801; PMCID: PMC3323991.
-
Cooperative effects of aminopeptidase N (CD13) expressed by nonmalignant and cancer cells within the tumor microenvironment. Proc Natl Acad Sci U S A. 2012 Jan 31; 109(5):1637-42. Guzman-Rojas L, Rangel R, Salameh A, Edwards JK, Dondossola E, Kim YG, Saghatelian A, Giordano RJ, Kolonin MG, Staquicini FI, Koivunen E, Sidman RL, Arap W, Pasqualini R. PMID: 22307623; PMCID: PMC3277167.
-
Functional analysis of protein targets by metabolomic approaches. Top Curr Chem. 2012; 324:137-62. Kim YG, Saghatelian A. PMID: 22083210.
-
Macrophage VLDL receptor promotes PAFAH secretion in mother's milk and suppresses systemic inflammation in nursing neonates. Nat Commun. 2012; 3:1008. Du Y, Yang M, Wei W, Huynh HD, Herz J, Saghatelian A, Wan Y. PMID: 22910354; PMCID: PMC3520613.
-
Discovery of a protein-metabolite interaction between unsaturated fatty acids and the nuclear receptor Nur77 using a metabolomics approach. J Am Chem Soc. 2011 Nov 02; 133(43):17168-71. Vinayavekhin N, Saghatelian A. PMID: 21973308; PMCID: PMC4569094.
-
Investigating endogenous peptides and peptidases using peptidomics. Biochemistry. 2011 Sep 06; 50(35):7447-61. Tinoco AD, Saghatelian A. PMID: 21786763; PMCID: PMC3418817.
-
A substrate-free activity-based protein profiling screen for the discovery of selective PREPL inhibitors. J Am Chem Soc. 2011 Aug 03; 133(30):11665-74. Lone AM, Bachovchin DA, Westwood DB, Speers AE, Spicer TP, Fernandez-Vega V, Chase P, Hodder PS, Rosen H, Cravatt BF, Saghatelian A. PMID: 21692504; PMCID: PMC3145007.
-
VLDL hydrolysis by hepatic lipase regulates PPARδ transcriptional responses. PLoS One. 2011; 6(7):e21209. Brown JD, Oligino E, Rader DJ, Saghatelian A, Plutzky J. PMID: 21750705; PMCID: PMC3130023.
-
Monoalkylglycerol ether lipids promote adipogenesis. J Am Chem Soc. 2011 Apr 13; 133(14):5178-81. Homan EA, Kim YG, Cardia JP, Saghatelian A. PMID: 21428285; PMCID: PMC4761264.
-
A peptidomics strategy to elucidate the proteolytic pathways that inactivate peptide hormones. Biochemistry. 2011 Mar 29; 50(12):2213-22. Tinoco AD, Kim YG, Tagore DM, Wiwczar J, Lane WS, Danial NN, Saghatelian A. PMID: 21299233; PMCID: PMC3076939.
-
A metabolomics strategy for detecting protein-metabolite interactions to identify natural nuclear receptor ligands. Mol Biosyst. 2011 Apr; 7(4):1046-9. Kim YG, Lou AC, Saghatelian A. PMID: 21283866.
-
The 2.5 Å structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation. Immunity. 2010 Dec 14; 33(6):853-62. Scharf L, Li NS, Hawk AJ, Garzón D, Zhang T, Fox LM, Kazen AR, Shah S, Haddadian EJ, Gumperz JE, Saghatelian A, Faraldo-Gómez JD, Meredith SC, Piccirilli JA, Adams EJ. PMID: 21167756; PMCID: PMC3010391.
-
Peptidomics of the prolyl peptidases. AAPS J. 2010 Dec; 12(4):483-91. Lone AM, Nolte WM, Tinoco AD, Saghatelian A. PMID: 20552307; PMCID: PMC2976987.
-
Untargeted metabolomics. Curr Protoc Mol Biol. 2010 Apr; Chapter 30:Unit 30.1.1-24. Vinayavekhin N, Saghatelian A. PMID: 20373502.
-
Expanding the dipeptidyl peptidase 4-regulated peptidome via an optimized peptidomics platform. J Am Chem Soc. 2010 Mar 24; 132(11):3819-30. Tinoco AD, Tagore DM, Saghatelian A. PMID: 20178363; PMCID: PMC2842575.
-
Exploring disease through metabolomics. ACS Chem Biol. 2010 Jan 15; 5(1):91-103. Vinayavekhin N, Homan EA, Saghatelian A. PMID: 20020774.
-
Peptidomics of prolyl endopeptidase in the central nervous system. Biochemistry. 2009 Dec 22; 48(50):11971-81. Nolte WM, Tagore DM, Lane WS, Saghatelian A. PMID: 19911840; PMCID: PMC2813186.
-
The promise and challenge of '-omic' approaches. Curr Opin Chem Biol. 2009 Dec; 13(5-6):501-2. MacBeath G, Saghatelian A. PMID: 19853495.
-
Regulation of alkyl-dihydrothiazole-carboxylates (ATCs) by iron and the pyochelin gene cluster in Pseudomonas aeruginosa. ACS Chem Biol. 2009 Aug 21; 4(8):617-23. Vinayavekhin N, Saghatelian A. PMID: 19621937.
-
Identification of an overabundant cholesterol precursor in hepatitis B virus replicating cells by untargeted lipid metabolite profiling. J Am Chem Soc. 2009 Apr 15; 131(14):5030-1. Rodgers MA, Saghatelian A, Yang PL. PMID: 19301856; PMCID: PMC4166558.
-
Peptidase substrates via global peptide profiling. Nat Chem Biol. 2009 Jan; 5(1):23-5. Tagore DM, Nolte WM, Neveu JM, Rangel R, Guzman-Rojas L, Pasqualini R, Arap W, Lane WS, Saghatelian A. PMID: 19011639; PMCID: PMC2730040.
-
A global metabolite profiling approach to identify protein-metabolite interactions. J Am Chem Soc. 2008 Oct 29; 130(43):14111-3. Tagore R, Thomas HR, Homan EA, Munawar A, Saghatelian A. PMID: 18831549.
-
Sequence-addressable DNA logic. Small. 2008 Apr; 4(4):427-31. Voelcker NH, Guckian KM, Saghatelian A, Ghadiri MR. PMID: 18350554.
-
Identification of protein pheromones that promote aggressive behaviour. Nature. 2007 Dec 06; 450(7171):899-902. Chamero P, Marton TF, Logan DW, Flanagan K, Cruz JR, Saghatelian A, Cravatt BF, Stowers L. PMID: 18064011.
-
Maternal PPAR gamma protects nursing neonates by suppressing the production of inflammatory milk. Genes Dev. 2007 Aug 01; 21(15):1895-908. Wan Y, Saghatelian A, Chong LW, Zhang CL, Cravatt BF, Evans RM. PMID: 17652179; PMCID: PMC1935028.
-
Assessing enzyme activities using stable isotope labeling and mass spectrometry. Mol Cell Proteomics. 2007 Oct; 6(10):1771-7. Everley PA, Gartner CA, Haas W, Saghatelian A, Elias JE, Cravatt BF, Zetter BR, Gygi SP. PMID: 17627935.
-
A streamlined metabolic pathway for the biosynthesis of moenomycin A. Chem Biol. 2007 Mar; 14(3):257-67. Ostash B, Saghatelian A, Walker S. PMID: 17379141; PMCID: PMC1936435.
-
An enzyme that regulates ether lipid signaling pathways in cancer annotated by multidimensional profiling. Chem Biol. 2006 Oct; 13(10):1041-50. Chiang KP, Niessen S, Saghatelian A, Cravatt BF. PMID: 17052608.
-
A FAAH-regulated class of N-acyl taurines that activates TRP ion channels. Biochemistry. 2006 Aug 01; 45(30):9007-15. Saghatelian A, McKinney MK, Bandell M, Patapoutian A, Cravatt BF. PMID: 16866345.
-
Inactivation of N-acyl phosphatidylethanolamine phospholipase D reveals multiple mechanisms for the biosynthesis of endocannabinoids. Biochemistry. 2006 Apr 18; 45(15):4720-6. Leung D, Saghatelian A, Simon GM, Cravatt BF. PMID: 16605240; PMCID: PMC1538545.
-
Target discovery in small-molecule cell-based screens by in situ proteome reactivity profiling. Nat Biotechnol. 2005 Oct; 23(10):1303-7. Evans MJ, Saghatelian A, Sorensen EJ, Cravatt BF. PMID: 16200062.
-
Discovery metabolite profiling--forging functional connections between the proteome and metabolome. Life Sci. 2005 Aug 19; 77(14):1759-66. Saghatelian A, Cravatt BF. PMID: 15964030.
-
Assignment of protein function in the postgenomic era. Nat Chem Biol. 2005 Aug; 1(3):130-42. Saghatelian A, Cravatt BF. PMID: 16408016.
-
Desorption/ionization on silicon nanowires. Anal Chem. 2005 Mar 15; 77(6):1641-6. Go EP, Apon JV, Luo G, Saghatelian A, Daniels RH, Sahi V, Dubrow R, Cravatt BF, Vertes A, Siuzdak G. PMID: 15762567.
-
Global strategies to integrate the proteome and metabolome. Curr Opin Chem Biol. 2005 Feb; 9(1):62-8. Saghatelian A, Cravatt BF. PMID: 15701455.
-
Assignment of endogenous substrates to enzymes by global metabolite profiling. Biochemistry. 2004 Nov 16; 43(45):14332-9. Saghatelian A, Trauger SA, Want EJ, Hawkins EG, Siuzdak G, Cravatt BF. PMID: 15533037.
-
Functional disassociation of the central and peripheral fatty acid amide signaling systems. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10821-6. Cravatt BF, Saghatelian A, Hawkins EG, Clement AB, Bracey MH, Lichtman AH. PMID: 15247426; PMCID: PMC490018.
-
Reversible inhibitors of fatty acid amide hydrolase that promote analgesia: evidence for an unprecedented combination of potency and selectivity. J Pharmacol Exp Ther. 2004 Nov; 311(2):441-8. Lichtman AH, Leung D, Shelton CC, Saghatelian A, Hardouin C, Boger DL, Cravatt BF. PMID: 15229230.
-
Activity-based probes for the proteomic profiling of metalloproteases. Proc Natl Acad Sci U S A. 2004 Jul 06; 101(27):10000-5. Saghatelian A, Jessani N, Joseph A, Humphrey M, Cravatt BF. PMID: 15220480; PMCID: PMC454150.
-
Single DNA rotaxanes of a transmembrane pore protein. Angew Chem Int Ed Engl. 2004 Jun 07; 43(23):3063-7. Sánchez-Quesada J, Saghatelian A, Cheley S, Bayley H, Ghadiri MR. PMID: 15188482; PMCID: PMC1866269.
-
DNA detection and signal amplification via an engineered allosteric enzyme. J Am Chem Soc. 2003 Jan 15; 125(2):344-5. Saghatelian A, Guckian KM, Thayer DA, Ghadiri MR. PMID: 12517141; PMCID: PMC2453066.
-
DNA-based photonic logic gates: AND, NAND, and INHIBIT. J Am Chem Soc. 2003 Jan 15; 125(2):346-7. Saghatelian A, Völcker NH, Guckian KM, Lin VS, Ghadiri MR. PMID: 12517142.
-
Total synthesis of the calphostins: application of fischer carbene complexes and thermodynamic control of atropisomers. J Org Chem. 2001 Feb 23; 66(4):1297-309. Merlic CA, Aldrich CC, Albaneze-Walker J, Saghatelian A, Mammen J. PMID: 11312960.
-
A chiroselective peptide replicator. Nature. 2001 Feb 15; 409(6822):797-801. Saghatelian A, Yokobayashi Y, Soltani K, Ghadiri MR. PMID: 11236988.
-
Carbene Complexes in the Synthesis of Complex Natural Products: Total Synthesis of the Calphostins. J Am Chem Soc. 2000 Apr 05; 122(13):3224-3225. Merlic CA, Aldrich CC, Albaneze-Walker J, Saghatelian A. PMID: 23335811; PMCID: PMC3548573.
US