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Statistical Atlas-Based Surrogate Model of Biventricular Wall Mechanics. bioRxiv. 2026 Jan 09. Robles A, Konanur R, Qi A, Finsberg H, Sundnes J, McCulloch AD. PMID: 41542442; PMCID: PMC12803124.
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Human Variant in the Cardiac Troponin I Switch Domain Causes Diastolic Dysfunction in a Novel Mouse Model. J Am Heart Assoc. 2025 Nov 18; 14(22):e040852. Silver E, Duran JM, Gunes BB, Fenwick AJ, Maisel S, Wang TM, Manso AM, Cruz MS, Gu Y, Fong J, Shathaya A, Chen C, Soto-Hermida A, Feng W, Cho Y, Bogomolovas J, Gelow JM, Masri A, Frazer KA, Ross RS, Chen J, Makarewich CA, Cammarato A, McCulloch AD, Bushway P, Adler ED. PMID: 41195779; PMCID: PMC12887218.
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Excitation and mechanical contraction of a 3D cardiomyocyte model. Biophys J. 2025 Sep 02; 124(17):2825-2839. Hatano A, Mochizuki Y, Sakakima H, Izumi S, Hoshijima M, Ellisman M, McCulloch AD. PMID: 40714841; PMCID: PMC12461023.
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Characteristics of left ventricular dysfunction in repaired tetralogy of Fallot: A multi-institutional deep learning analysis of regional strain and dyssynchrony. J Cardiovasc Magn Reson. 2025; 27(1):101886. Crabb BT, Chandrupatla RS, Masutani EM, Wong SY, Govil S, Montserrat S, Prat-González S, Vega-Adauy J, Atkins M, Lorenzatti D, Zocchi C, Panaioli E, Boddaert N, Alshawabkeh L, Hahn L, Hegde S, McCulloch AD, Raimondi F, Hsiao A. PMID: 40122390; PMCID: PMC12182814.
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From FAIR to CURE: Guidelines for Computational Models of Biological Systems. ArXiv. 2025 Feb 21. Sauro HM, Agmon E, Blinov ML, Gennari JH, Hellerstein J, Heydarabadipour A, Hunter P, Jardine BE, May E, Nickerson DP, Smith LP, Bader GD, Bergmann F, Boyle PM, Dräger A, Faeder JR, Feng S, Freire J, Fröhlich F, Glazier JA, Gorochowski TE, Helikar T, Hoops S, Imoukhuede P, Keating SM, Konig M, Laubenbacher R, Loew LM, Lopez CF, Lytton WW, McCulloch A, Mendes P, Myers CJ, Myers JG, Mulugeta L, Niarakis A, van Niekerk DD, Olivier BG, Patrie AA, Quardokus EM, Radde N, Rohwer JM, Sahle S, Schaff JC, Sego TJ, Shin J, Snoep JL, Vadigepalli R, Wiley HS, Waltemath D, Moraru I. PMID: 40034129; PMCID: PMC11875277.
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Macrophages on the run: Exercise balances macrophage polarization for improved health. Mol Metab. 2024 Dec; 90:102058. Voskoboynik Y, McCulloch AD, Sahoo D. PMID: 39476967; PMCID: PMC11585839.
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Successful cardiac resynchronization therapy reduces negative septal work in patient-specific models of dyssynchronous heart failure. PLoS Comput Biol. 2024 Oct; 20(10):e1012150. Craine A, Krishnamurthy A, Villongco CT, Vincent K, Krummen DE, Narayan SM, Kerckhoffs RCP, Omens JH, Contijoch F, McCulloch AD. PMID: 39388481; PMCID: PMC11495643.
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NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation. J Chem Inf Model. 2024 Oct 28; 64(20):7966-7976. Stokely AM, Votapka LW, Hock MT, Teitgen AE, McCammon JA, McCulloch AD, Amaro RE. PMID: 39364881; PMCID: PMC12039534.
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Multi-organ transcriptome atlas of a mouse model of relative energy deficiency in sport. Cell Metab. 2024 Sep 03; 36(9):2015-2037.e6. van Rosmalen L, Zhu J, Maier G, Gacasan EG, Lin T, Zhemchuzhnikova E, Rothenberg V, Razu S, Deota S, Ramasamy RK, Sah RL, McCulloch AD, Hut RA, Panda S. PMID: 39232281; PMCID: PMC11378950.
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Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure. Proc Natl Acad Sci U S A. 2024 Aug 27; 121(35):e2322077121. Teitgen AE, Hock MT, McCabe KJ, Childers MC, Huber GA, Marzban B, Beard DA, McCammon JA, Regnier M, McCulloch AD. PMID: 39172779; PMCID: PMC11363293.
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Authors' response to letter to the editor regarding impact of artificial intelligence arrhythmia mapping on time to first ablation, procedure duration, and fluoroscopy use. J Cardiovasc Electrophysiol. 2024 Sep; 35(9):1898-1899. Fox SR, Toomu A, Gu K, Kang J, Sung K, Han FT, Hoffmayer KS, Hsu JC, Raissi F, Feld GK, McCulloch AD, Ho G, Krummen DE. PMID: 38979951.
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Successful Cardiac Resynchronization Therapy Reduces Negative Septal Work in Patient-Specific Models of Dyssynchronous Heart Failure. bioRxiv. 2024 May 14. Craine A, Krishnamurthy A, Villongco CT, Vincent K, Krummen DE, Narayan SM, Kerckhoffs RCP, Omens JH, Contijoch F, McCulloch AD. PMID: 38798676; PMCID: PMC11118505.
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Network model of skeletal muscle cell signalling predicts differential responses to endurance and resistance exercise training. Exp Physiol. 2024 Jun; 109(6):939-955. Fowler A, Knaus KR, Khuu S, Khalilimeybodi A, Schenk S, Ward SR, Fry AC, Rangamani P, McCulloch AD. PMID: 38643471; PMCID: PMC11140181.
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Impact of artificial intelligence arrhythmia mapping on time to first ablation, procedure duration, and fluoroscopy use. J Cardiovasc Electrophysiol. 2024 May; 35(5):916-928. Fox SR, Toomu A, Gu K, Kang J, Sung K, Han FT, Hoffmayer KS, Hsu JC, Raissi F, Feld GK, McCulloch AD, Ho G, Krummen DE. PMID: 38439119.
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A universal biventricular coordinate system incorporating valve annuli: Validation in congenital heart disease. Med Image Anal. 2024 04; 93:103091. Pankewitz L, Hustad KG, Govil S, Perry JC, Hegde S, Tang R, Omens JH, Young AA, McCulloch AD, Arevalo HJ. PMID: 38301348; PMCID: PMC11227738.
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Differential sensitivity to longitudinal and transverse stretch mediates transcriptional responses in mouse neonatal ventricular myocytes. Am J Physiol Heart Circ Physiol. 2024 02 01; 326(2):H370-H384. Cao S, Buchholz KS, Tan P, Stowe JC, Wang A, Fowler A, Knaus KR, Khalilimeybodi A, Zambon AC, Omens JH, Saucerman JJ, McCulloch AD. PMID: 38063811; PMCID: PMC11245882.
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Plakophilin 2 gene therapy prevents and rescues arrhythmogenic right ventricular cardiomyopathy in a mouse model harboring patient genetics. Nat Cardiovasc Res. 2023 12; 2(12):1246-1261. Bradford WH, Zhang J, Gutierrez-Lara EJ, Liang Y, Do A, Wang TM, Nguyen L, Mataraarachchi N, Wang J, Gu Y, McCulloch A, Peterson KL, Sheikh F. PMID: 39196150; PMCID: PMC11357983.
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Multiscale computational modeling of the effects of 2'-deoxy-ATP on cardiac muscle calcium handling. J Appl Phys. 2023 Aug 21; 134(7):074905. Hock MT, Teitgen AE, McCabe KJ, Hirakis SP, Huber GA, Regnier M, Amaro RE, McCammon JA, McCulloch AD. PMID: 37601331; PMCID: PMC10435275.
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How can AI accelerate advances in physiology? J Gen Physiol. 2023 06 05; 155(6). McCulloch AD. PMID: 37102985; PMCID: PMC10140544.
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Nuclear mechanosignaling in striated muscle diseases. Front Physiol. 2023; 14:1126111. Zhang B, Powers JD, McCulloch AD, Chi NC. PMID: 36960155; PMCID: PMC10027932.
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A deep learning approach for fully automated cardiac shape modeling in tetralogy of Fallot. J Cardiovasc Magn Reson. 2023 02 27; 25(1):15. Govil S, Crabb BT, Deng Y, Dal Toso L, Puyol-Antón E, Pushparajah K, Hegde S, Perry JC, Omens JH, Hsiao A, Young AA, McCulloch AD. PMID: 36849960; PMCID: PMC9969707.
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Biventricular shape modes discriminate pulmonary valve replacement in tetralogy of Fallot better than imaging indices. Sci Rep. 2023 02 09; 13(1):2335. Govil S, Mauger C, Hegde S, Occleshaw CJ, Yu X, Perry JC, Young AA, Omens JH, McCulloch AD. PMID: 36759522; PMCID: PMC9911768.
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An Atlas-Based Analysis of Biventricular Mechanics in Tetralogy of Fallot. Stat Atlases Comput Models Heart. 2022 Sep; 13593:112-122. Govil S, Hegde S, Perry JC, Omens JH, McCulloch AD. PMID: 37251544; PMCID: PMC10226763.
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Signaling network model of cardiomyocyte morphological changes in familial cardiomyopathy. J Mol Cell Cardiol. 2023 Jan; 174:1-14. Khalilimeybodi A, Riaz M, Campbell SG, Omens JH, McCulloch AD, Qyang Y, Saucerman JJ. PMID: 36370475; PMCID: PMC10230857.
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Forward-Solution Noninvasive Computational Arrhythmia Mapping: The VMAP Study. Circ Arrhythm Electrophysiol. 2022 09; 15(9):e010857. Krummen DE, Villongco CT, Ho G, Schricker AA, Field ME, Sung K, Kacena KA, Martinson MS, Hoffmayer KS, Hsu JC, Raissi F, Feld GK, McCulloch AD, Han FT. PMID: 36069189; PMCID: PMC9509662.
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Le Cœur en Sabot: shape associations with adverse events in repaired tetralogy of Fallot. J Cardiovasc Magn Reson. 2022 08 04; 24(1):46. Mîra A, Lamata P, Pushparajah K, Abraham G, Mauger CA, McCulloch AD, Omens JH, Bissell MM, Blair Z, Huffaker T, Tandon A, Engelhardt S, Koehler S, Pickardt T, Beerbaum P, Sarikouch S, Latus H, Greil G, Young AA, Hussain T. PMID: 35922806; PMCID: PMC9351245.
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Right Ventricular Flow Vorticity Relationships With Biventricular Shape in Adult Tetralogy of Fallot. Front Cardiovasc Med. 2021; 8:806107. Elsayed A, Mauger CA, Ferdian E, Gilbert K, Scadeng M, Occleshaw CJ, Lowe BS, McCulloch AD, Omens JH, Govil S, Pushparajah K, Young AA. PMID: 35127866; PMCID: PMC8813860.
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Subcellular Remodeling in Filamin C Deficient Mouse Hearts Impairs Myocyte Tension Development during Progression of Dilated Cardiomyopathy. Int J Mol Sci. 2022 Jan 14; 23(2). Powers JD, Kirkland NJ, Liu C, Razu SS, Fang X, Engler AJ, Chen J, McCulloch AD. PMID: 35055055; PMCID: PMC8779483.
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Three-dimensional transistor arrays for intra- and inter-cellular recording. Nat Nanotechnol. 2022 03; 17(3):292-300. Gu Y, Wang C, Kim N, Zhang J, Wang TM, Stowe J, Nasiri R, Li J, Zhang D, Yang A, Hsu LH, Dai X, Mu J, Liu Z, Lin M, Li W, Wang C, Gong H, Chen Y, Lei Y, Hu H, Li Y, Zhang L, Huang Z, Zhang X, Ahadian S, Banik P, Zhang L, Jiang X, Burke PJ, Khademhosseini A, McCulloch AD, Xu S. PMID: 34949774; PMCID: PMC8994210.
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Isolation and reconstruction of cardiac mitochondria from SBEM images using a deep learning-based method. J Struct Biol. 2022 03; 214(1):107806. Hatano A, Someya M, Tanaka H, Sakakima H, Izumi S, Hoshijima M, Ellisman M, McCulloch AD. PMID: 34742833.
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Right-left ventricular shape variations in tetralogy of Fallot: associations with pulmonary regurgitation. J Cardiovasc Magn Reson. 2021 10 07; 23(1):105. Mauger CA, Govil S, Chabiniok R, Gilbert K, Hegde S, Hussain T, McCulloch AD, Occleshaw CJ, Omens J, Perry JC, Pushparajah K, Suinesiaputra A, Zhong L, Young AA. PMID: 34615541; PMCID: PMC8496085.
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Computational ECG mapping and respiratory gating to optimize stereotactic ablative radiotherapy workflow for refractory ventricular tachycardia. Heart Rhythm O2. 2021 Oct; 2(5):511-520. Ho G, Atwood TF, Bruggeman AR, Moore KL, McVeigh E, Villongco CT, Han FT, Hsu JC, Hoffmayer KS, Raissi F, Lin GY, Schricker A, Woods CE, Cheung JP, Taira AV, McCulloch A, Birgersdotter-Green U, Feld GK, Mundt AJ, Krummen DE. PMID: 34667967; PMCID: PMC8505208.
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Cardiac cell type-specific gene regulatory programs and disease risk association. Sci Adv. 2021 05; 7(20). Hocker JD, Poirion OB, Zhu F, Buchanan J, Zhang K, Chiou J, Wang TM, Zhang Q, Hou X, Li YE, Zhang Y, Farah EN, Wang A, McCulloch AD, Gaulton KJ, Ren B, Chi NC, Preissl S. PMID: 33990324; PMCID: PMC8121433.
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Atlas-based methods for efficient characterization of patient-specific ventricular activation patterns. Europace. 2021 03 04; 23(23 Suppl 1):i88-i95. Vincent KP, Forsch N, Govil S, Joblon JM, Omens JH, Perry JC, McCulloch AD. PMID: 33751079; PMCID: PMC7943357.
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Computational models of cardiovascular regulatory mechanisms. J Mol Cell Cardiol. 2021 06; 155:111. McCulloch AD, Grandi E, Saucerman JJ. PMID: 33647311.
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Mechano-Electric Coupling and Arrhythmogenic Current Generation in a Computational Model of Coupled Myocytes. Front Physiol. 2020; 11:519951. Timmermann V, McCulloch AD. PMID: 33362569; PMCID: PMC7758443.
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Prolonged Exposure to Microgravity Reduces Cardiac Contractility and Initiates Remodeling in Drosophila. Cell Rep. 2020 12 08; 33(10):108445. Walls S, Diop S, Birse R, Elmen L, Gan Z, Kalvakuri S, Pineda S, Reddy C, Taylor E, Trinh B, Vogler G, Zarndt R, McCulloch A, Lee P, Bhattacharya S, Bodmer R, Ocorr K. PMID: 33242407; PMCID: PMC7787258.
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Maintaining resting cardiac fibroblasts in vitro by disrupting mechanotransduction. PLoS One. 2020; 15(10):e0241390. Gilles G, McCulloch AD, Brakebusch CH, Herum KM. PMID: 33104742; PMCID: PMC7588109.
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Modulating the tension-time integral of the cardiac twitch prevents dilated cardiomyopathy in murine hearts. JCI Insight. 2020 10 15; 5(20). Powers JD, Kooiker KB, Mason AB, Teitgen AE, Flint GV, Tardiff JC, Schwartz SD, McCulloch AD, Regnier M, Davis J, Moussavi-Harami F. PMID: 32931484; PMCID: PMC7605524.
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Computational analysis of cardiac structure and function in congenital heart disease: Translating discoveries to clinical strategies. J Comput Sci. 2021 May; 52. Forsch N, Govil S, Perry JC, Hegde S, Young AA, Omens JH, McCulloch AD. PMID: 34691293; PMCID: PMC8528218.
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Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere. Arch Biochem Biophys. 2020 11 30; 695:108582. McCabe KJ, Aboelkassem Y, Teitgen AE, Huber GA, McCammon JA, Regnier M, McCulloch AD. PMID: 32956632; PMCID: PMC7721865.
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Histamine-induced biphasic activation of RhoA allows for persistent RhoA signaling. PLoS Biol. 2020 09; 18(9):e3000866. Zhang JZ, Nguyen AH, Miyamoto S, Heller Brown J, McCulloch AD, Zhang J. PMID: 32881857; PMCID: PMC7494096.
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Methods and sensors for functional genomic studies of cell-cycle transitions in single cells. Physiol Genomics. 2020 10 01; 52(10):468-477. Zambon AC, Hsu T, Kim SE, Klinck M, Stowe J, Henderson LM, Singer D, Patam L, Lim C, McCulloch AD, Hu B, Hickerson AI. PMID: 32866086; PMCID: PMC8828270.
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Atlas-based measures of left ventricular shape may improve characterization of adverse remodeling in anthracycline-exposed childhood cancer survivors: a cross-sectional imaging study. Cardiooncology. 2020; 6:13. Narayan HK, Xu R, Forsch N, Govil S, Iukuridze D, Lindenfeld L, Adler E, Hegde S, Tremoulet A, Ky B, Armenian S, Omens J, McCulloch AD. PMID: 32782827; PMCID: PMC7414730.
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Direct 3D bioprinting of cardiac micro-tissues mimicking native myocardium. Biomaterials. 2020 10; 256:120204. Liu J, Miller K, Ma X, Dewan S, Lawrence N, Whang G, Chung P, McCulloch AD, Chen S. PMID: 32622020; PMCID: PMC7423764.
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Quantification of model and data uncertainty in a network analysis of cardiac myocyte mechanosignalling. Philos Trans A Math Phys Eng Sci. 2020 Jun 12; 378(2173):20190336. Cao S, Aboelkassem Y, Wang A, Valdez-Jasso D, Saucerman JJ, Omens JH, McCulloch AD. PMID: 32448062; PMCID: PMC7287329.
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Cardiomyocyte Expression of ZO-1 Is Essential for Normal Atrioventricular Conduction but Does Not Alter Ventricular Function. Circ Res. 2020 07 03; 127(2):284-297. Zhang J, Vincent KP, Peter AK, Klos M, Cheng H, Huang SM, Towne JK, Ferng D, Gu Y, Dalton ND, Chan Y, Li R, Peterson KL, Chen J, McCulloch AD, Knowlton KU, Ross RS. PMID: 32345129; PMCID: PMC7571547.
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Regional variations in ex-vivo diffusion tensor anisotropy are associated with cardiomyocyte remodeling in rats after left ventricular pressure overload. J Cardiovasc Magn Reson. 2020 04 02; 22(1):21. Carruth ED, Teh I, Schneider JE, McCulloch AD, Omens JH, Frank LR. PMID: 32241289; PMCID: PMC7114814.
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Research Priorities for Heart Failure With Preserved Ejection Fraction: National Heart, Lung, and Blood Institute Working Group Summary. Circulation. 2020 03 24; 141(12):1001-1026. Shah SJ, Borlaug BA, Kitzman DW, McCulloch AD, Blaxall BC, Agarwal R, Chirinos JA, Collins S, Deo RC, Gladwin MT, Granzier H, Hummel SL, Kass DA, Redfield MM, Sam F, Wang TJ, Desvigne-Nickens P, Adhikari BB. PMID: 32202936; PMCID: PMC7101072.
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Improved compressed sensing and super-resolution of cardiac diffusion MRI with structure-guided total variation. Magn Reson Med. 2020 10; 84(4):1868-1880. Teh I, McClymont D, Carruth E, Omens J, McCulloch A, Schneider JE. PMID: 32125040; PMCID: PMC8629124.
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Syndecan-4 Protects the Heart From the Profibrotic Effects of Thrombin-Cleaved Osteopontin. J Am Heart Assoc. 2020 02 04; 9(3):e013518. Herum KM, Romaine A, Wang A, Melleby AO, Strand ME, Pacheco J, Braathen B, Dunér P, Tønnessen T, Lunde IG, Sjaastad I, Brakebusch C, McCulloch AD, Gomez MF, Carlson CR, Christensen G. PMID: 32000579; PMCID: PMC7033859.
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Predictions of hypertrophy and its regression in response to pressure overload. Biomech Model Mechanobiol. 2020 Jun; 19(3):1079-1089. Yoshida K, McCulloch AD, Omens JH, Holmes JW. PMID: 31813071; PMCID: PMC8071348.
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Arrhythmogenic Current Generation by Myofilament-Triggered Ca2+ Release and Sarcomere Heterogeneity. Biophys J. 2019 12 17; 117(12):2471-2485. Timmermann V, Edwards AG, Wall ST, Sundnes J, McCulloch AD. PMID: 31810659; PMCID: PMC6990379.
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Multiscale Models of Cardiac Muscle Biophysics and Tissue Remodeling in Hypertrophic Cardiomyopathies. Curr Opin Biomed Eng. 2019 Sep; 11:35-44. Aboelkassem Y, Powers JD, McCabe KJ, McCulloch AD. PMID: 31886450; PMCID: PMC6934086.
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Optimization Framework for Patient-Specific Cardiac Modeling. Cardiovasc Eng Technol. 2019 12; 10(4):553-567. Mineroff J, McCulloch AD, Krummen D, Ganapathysubramanian B, Krishnamurthy A. PMID: 31531820; PMCID: PMC6868335.
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A Stochastic Multiscale Model of Cardiac Thin Filament Activation Using Brownian-Langevin Dynamics. Biophys J. 2019 12 17; 117(12):2255-2272. Aboelkassem Y, McCabe KJ, Huber GA, Regnier M, McCammon JA, McCulloch AD. PMID: 31547973; PMCID: PMC6990154.
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Mechanical regulation of gene expression in cardiac myocytes and fibroblasts. Nat Rev Cardiol. 2019 06; 16(6):361-378. Saucerman JJ, Tan PM, Buchholz KS, McCulloch AD, Omens JH. PMID: 30683889; PMCID: PMC6525041.
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Properties of cardiac conduction in a cell-based computational model. PLoS Comput Biol. 2019 05; 15(5):e1007042. Jæger KH, Edwards AG, McCulloch A, Tveito A. PMID: 31150383; PMCID: PMC6561587.
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Cardiac myosin activation with 2-deoxy-ATP via increased electrostatic interactions with actin. Proc Natl Acad Sci U S A. 2019 06 04; 116(23):11502-11507. Powers JD, Yuan CC, McCabe KJ, Murray JD, Childers MC, Flint GV, Moussavi-Harami F, Mohran S, Castillo R, Zuzek C, Ma W, Daggett V, McCulloch AD, Irving TC, Regnier M. PMID: 31110001; PMCID: PMC6561254.
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A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows. PLoS Comput Biol. 2019 03; 15(3):e1006856. Yang PC, Purawat S, Ieong PU, Jeng MT, DeMarco KR, Vorobyov I, McCulloch AD, Altintas I, Amaro RE, Clancy CE. PMID: 30849072; PMCID: PMC6426265.
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Array atomic force microscopy for real-time multiparametric analysis. Proc Natl Acad Sci U S A. 2019 03 26; 116(13):5872-5877. Yang Q, Ma Q, Herum KM, Wang C, Patel N, Lee J, Wang S, Yen TM, Wang J, Tang H, Lo YH, Head BP, Azam F, Xu S, Cauwenberghs G, McCulloch AD, John S, Liu Z, Lal R. PMID: 30850523; PMCID: PMC6442637.
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Long QT syndrome caveolin-3 mutations differentially modulate Kv 4 and Cav 1.2 channels to contribute to action potential prolongation. J Physiol. 2019 03; 597(6):1531-1551. Tyan L, Foell JD, Vincent KP, Woon MT, Mesquitta WT, Lang D, Best JM, Ackerman MJ, McCulloch AD, Glukhov AV, Balijepalli RC, Kamp TJ. PMID: 30588629; PMCID: PMC6418751.
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The addition of insulin to home parenteral nutrition for the control of hyperglycaemia: A case series. Clin Nutr ESPEN. 2019 04; 30:204-207. McCulloch A, Bansiya V, Woodward JM. PMID: 30904223.
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3D printed micro-scale force gauge arrays to improve human cardiac tissue maturation and enable high throughput drug testing. Acta Biomater. 2019 09 01; 95:319-327. Ma X, Dewan S, Liu J, Tang M, Miller KL, Yu C, Lawrence N, McCulloch AD, Chen S. PMID: 30576862; PMCID: PMC6584548.
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An Iterative Diffeomorphic Algorithm for Registration of Subdivision Surfaces: Application to Congenital Heart Disease. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:596-599. Mauger C, Gilbert K, Suinesiaputra A, Pontre B, Omens J, McCulloch A, Young A. PMID: 30440467; PMCID: PMC8175008.
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Tissue-Specific Optical Mapping Models of Swine Atria Informed by Optical Coherence Tomography. Biophys J. 2018 03 27; 114(6):1477-1489. Lye TH, Vincent KP, McCulloch AD, Hendon CP. PMID: 29590604; PMCID: PMC5883619.
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Efficient Computational Modeling of Human Ventricular Activation and Its Electrocardiographic Representation: A Sensitivity Study. Cardiovasc Eng Technol. 2018 09; 9(3):447-467. Cranford JP, O'Hara TJ, Villongco CT, Hafez OM, Blake RC, Loscalzo J, Fattebert JL, Richards DF, Zhang X, Glosli JN, McCulloch AD, Krummen DE, Lightstone FC, Wong SE. PMID: 29549620; PMCID: PMC6095770.
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Decreasing Compensatory Ability of Concentric Ventricular Hypertrophy in Aortic-Banded Rat Hearts. Front Physiol. 2018; 9:37. Lewalle A, Land S, Carruth E, Frank LR, Lamata P, Omens JH, McCulloch AD, Niederer SA, Smith NP. PMID: 29527171; PMCID: PMC5829063.
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Spanish and Catalan translation, cultural adaptation and validation of the Picker Patient Experience Questionnaire-15. J Healthc Qual Res. 2018 Jan - Feb; 33(1):10-17. Bertran MJ, Viñarás M, Salamero M, Garcia F, Graham C, McCulloch A, Escarrabill J. PMID: 29454739.
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Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. J Biomech Eng. 2018 02 01; 140(2). Erdemir A, Hunter PJ, Holzapfel GA, Loew LM, Middleton J, Jacobs CR, Nithiarasu P, Löhner R, Wei G, Winkelstein BA, Barocas VH, Guilak F, Ku JP, Hicks JL, Delp SL, Sacks M, Weiss JA, Ateshian GA, Maas SA, McCulloch AD, Peng GCY. PMID: 29247253; PMCID: PMC5821103.
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Atlas-Based Computational Analysis of Heart Shape and Function in Congenital Heart Disease. J Cardiovasc Transl Res. 2018 04; 11(2):123-132. Gilbert K, Forsch N, Hegde S, Mauger C, Omens JH, Perry JC, Pontré B, Suinesiaputra A, Young AA, McCulloch AD. PMID: 29294215; PMCID: PMC5910190.
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Predictive model identifies key network regulators of cardiomyocyte mechano-signaling. PLoS Comput Biol. 2017 Nov; 13(11):e1005854. Tan PM, Buchholz KS, Omens JH, McCulloch AD, Saucerman JJ. PMID: 29131824; PMCID: PMC5703578.
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An integrative appraisal of mechano-electric feedback mechanisms in the heart. Prog Biophys Mol Biol. 2017 11; 130(Pt B):404-417. Timmermann V, Dejgaard LA, Haugaa KH, Edwards AG, Sundnes J, McCulloch AD, Wall ST. PMID: 28851517; PMCID: PMC5716869.
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Rotors exhibit greater surface ECG variation during ventricular fibrillation than focal sources due to wavebreak, secondary rotors, and meander. J Cardiovasc Electrophysiol. 2017 Oct; 28(10):1158-1166. Ho G, Villongco CT, Yousefian O, Bradshaw A, Nguyen A, Faiwiszewski Y, Hayase J, Rappel WJ, McCulloch AD, Krummen DE. PMID: 28670858; PMCID: PMC7909714.
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Transcriptomic analysis identifies a role of PI3K-Akt signalling in the responses of skeletal muscle to acute hypoxia in vivo. J Physiol. 2017 09 01; 595(17):5797-5813. Gan Z, Powell FL, Zambon AC, Buchholz KS, Fu Z, Ocorr K, Bodmer R, Moya EA, Stowe JC, Haddad GG, McCulloch AD. PMID: 28688178; PMCID: PMC5577531.
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The Soft- and Hard-Heartedness of Cardiac Fibroblasts: Mechanotransduction Signaling Pathways in Fibrosis of the Heart. J Clin Med. 2017 May 19; 6(5). Herum KM, Lunde IG, McCulloch AD, Christensen G. PMID: 28534817; PMCID: PMC5447944.
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Mechanical regulation of cardiac fibroblast profibrotic phenotypes. Mol Biol Cell. 2017 Jul 07; 28(14):1871-1882. Herum KM, Choppe J, Kumar A, Engler AJ, McCulloch AD. PMID: 28468977; PMCID: PMC5541838.
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Insights and Challenges of Multi-Scale Modeling of Sarcomere Mechanics in cTn and Tm DCM Mutants-Genotype to Cellular Phenotype. Front Physiol. 2017; 8:151. Dewan S, McCabe KJ, Regnier M, McCulloch AD. PMID: 28352236; PMCID: PMC5348544.
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Model of Human Fetal Growth in Hypoplastic Left Heart Syndrome: Reduced Ventricular Growth Due to Decreased Ventricular Filling and Altered Shape. Front Pediatr. 2017; 5:25. Dewan S, Krishnamurthy A, Kole D, Conca G, Kerckhoffs R, Puchalski MD, Omens JH, Sun H, Nigam V, McCulloch AD. PMID: 28275592; PMCID: PMC5319967.
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Non-invasive, model-based measures of ventricular electrical dyssynchrony for predicting CRT outcomes. Europace. 2016 Dec; 18(suppl 4):iv104-iv112. Villongco CT, Krummen DE, Omens JH, McCulloch AD. PMID: 28011837; PMCID: PMC5225967.
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Transmural gradients of myocardial structure and mechanics: Implications for fiber stress and strain in pressure overload. Prog Biophys Mol Biol. 2016 Dec; 122(3):215-226. Carruth ED, McCulloch AD, Omens JH. PMID: 27845176; PMCID: PMC5161628.
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Evaluation of non-Gaussian diffusion in cardiac MRI. Magn Reson Med. 2017 09; 78(3):1174-1186. McClymont D, Teh I, Carruth E, Omens J, McCulloch A, Whittington HJ, Kohl P, Grau V, Schneider JE. PMID: 27670633; PMCID: PMC5366286.
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Atlas-Based Ventricular Shape Analysis for Understanding Congenital Heart Disease. Prog Pediatr Cardiol. 2016 Dec; 43:61-69. Farrar G, Suinesiaputra A, Gilbert K, Perry JC, Hegde S, Marsden A, Young AA, Omens JH, McCulloch AD. PMID: 28082823; PMCID: PMC5222611.
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Improving assessment of congenital heart disease through rapid patient specific modeling. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1228-1231. Gilbert K, Farrar G, Cowan B, Suinesiaputra A, Occleshaw C, Pontre B, Perry J, Hegde S, Omens J, McCulloch A, Young A. PMID: 28268546.
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A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation. PLoS Comput Biol. 2016 07; 12(7):e1005005. Yang PC, Boras BW, Jeng MT, Docken SS, Lewis TJ, McCulloch AD, Harvey RD, Clancy CE. PMID: 27409243; PMCID: PMC4943723.
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Cardiac image modelling: Breadth and depth in heart disease. Med Image Anal. 2016 10; 33:38-43. Suinesiaputra A, McCulloch AD, Nash MP, Pontre B, Young AA. PMID: 27349830; PMCID: PMC5123588.
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Effects of Cardiac Troponin I Mutation P83S on Contractile Properties and the Modulation by PKA-Mediated Phosphorylation. J Phys Chem B. 2016 08 25; 120(33):8238-53. Cheng Y, Lindert S, Oxenford L, Tu AY, McCulloch AD, Regnier M. PMID: 27150586; PMCID: PMC5001945.
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Molecular Effects of cTnC DCM Mutations on Calcium Sensitivity and Myofilament Activation-An Integrated Multiscale Modeling Study. J Phys Chem B. 2016 08 25; 120(33):8264-75. Dewan S, McCabe KJ, Regnier M, McCulloch AD, Lindert S. PMID: 27133568; PMCID: PMC5001916.
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Computing rates of Markov models of voltage-gated ion channels by inverting partial differential equations governing the probability density functions of the conducting and non-conducting states. Math Biosci. 2016 07; 277:126-35. Tveito A, Lines GT, Edwards AG, McCulloch A. PMID: 27154008; PMCID: PMC4894014.
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Multi-scale Modeling of the Cardiovascular System: Disease Development, Progression, and Clinical Intervention. Ann Biomed Eng. 2016 09; 44(9):2642-60. Zhang Y, Barocas VH, Berceli SA, Clancy CE, Eckmann DM, Garbey M, Kassab GS, Lochner DR, McCulloch AD, Tran-Son-Tay R, Trayanova NA. PMID: 27138523; PMCID: PMC4983486.
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Desmosomal junctions are necessary for adult sinus node function. Cardiovasc Res. 2016 08 01; 111(3):274-86. Mezzano V, Liang Y, Wright AT, Lyon RC, Pfeiffer E, Song MY, Gu Y, Dalton ND, Scheinman M, Peterson KL, Evans SM, Fowler S, Cerrone M, McCulloch AD, Sheikh F. PMID: 27097650; PMCID: PMC4957488.
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Electrophysiology and metabolism of caveolin-3-overexpressing mice. Basic Res Cardiol. 2016 May; 111(3):28. Schilling JM, Horikawa YT, Zemljic-Harpf AE, Vincent KP, Tyan L, Yu JK, McCulloch AD, Balijepalli RC, Patel HH, Roth DM. PMID: 27023865; PMCID: PMC5336321.
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Systems Biophysics: Multiscale Biophysical Modeling of Organ Systems. Biophys J. 2016 Mar 08; 110(5):1023-7. McCulloch AD. PMID: 26958877; PMCID: PMC4788749.
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Biomechanics Simulations Using Cubic Hermite Meshes with Extraordinary Nodes for Isogeometric Cardiac Modeling. Comput Aided Geom Des. 2016 Mar; 43:27-38. Krishnamurthy A, Gonzales MJ, Sturgeon G, Segars WP, McCulloch AD. PMID: 27182096; PMCID: PMC4862616.
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3D cardiac μtissues within a microfluidic device with real-time contractile stress readout. Lab Chip. 2016 Jan 07; 16(1):153-62. Aung A, Bhullar IS, Theprungsirikul J, Davey SK, Lim HL, Chiu YJ, Ma X, Dewan S, Lo YH, McCulloch A, Varghese S. PMID: 26588203; PMCID: PMC4681661.
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Bitopic Sphingosine 1-Phosphate Receptor 3 (S1P3) Antagonist Rescue from Complete Heart Block: Pharmacological and Genetic Evidence for Direct S1P3 Regulation of Mouse Cardiac Conduction. Mol Pharmacol. 2016 Jan; 89(1):176-86. Sanna MG, Vincent KP, Repetto E, Nguyen N, Brown SJ, Abgaryan L, Riley SW, Leaf NB, Cahalan SM, Kiosses WB, Kohno Y, Brown JH, McCulloch AD, Rosen H, Gonzalez-Cabrera PJ. PMID: 26494861; PMCID: PMC4702096.
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Troponin I Mutations R146G and R21C Alter Cardiac Troponin Function, Contractile Properties, and Modulation by Protein Kinase A (PKA)-mediated Phosphorylation. J Biol Chem. 2015 Nov 13; 290(46):27749-66. Cheng Y, Rao V, Tu AY, Lindert S, Wang D, Oxenford L, McCulloch AD, McCammon JA, Regnier M. PMID: 26391394; PMCID: PMC4646022.
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Bridging scales through multiscale modeling: a case study on protein kinase A. Front Physiol. 2015; 6:250. Boras BW, Hirakis SP, Votapka LW, Malmstrom RD, Amaro RE, McCulloch AD. PMID: 26441670; PMCID: PMC4563169.
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Intramyocardial injection of hydrogel with high interstitial spread does not impact action potential propagation. Acta Biomater. 2015 Oct; 26:13-22. Suarez SL, Rane AA, Muñoz A, Wright AT, Zhang SX, Braden RL, Almutairi A, McCulloch AD, Christman KL. PMID: 26265060; PMCID: PMC4772723.
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High-order finite element methods for cardiac monodomain simulations. Front Physiol. 2015; 6:217. Vincent KP, Gonzales MJ, Gillette AK, Villongco CT, Pezzuto S, Omens JH, Holst MJ, McCulloch AD. PMID: 26300783; PMCID: PMC4525671.
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Endothelin receptor B, a candidate gene from human studies at high altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10425-30. Stobdan T, Zhou D, Ao-Ieong E, Ortiz D, Ronen R, Hartley I, Gan Z, McCulloch AD, Bafna V, Cabrales P, Haddad GG. PMID: 26240367; PMCID: PMC4547246.
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Creating shape templates for patient specific biventricular modeling in congenital heart disease. Annu Int Conf IEEE Eng Med Biol Soc. 2015 Aug; 2015:679-82. Gilbert K, Farrar G, Cowan BR, Suinesiaputra A, Occleshaw C, Pontre B, Perry J, Hegde S, Marsden A, Omens J, McCulloch A, Young AA. PMID: 26736353; PMCID: PMC5797697.
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Atrial-selective targeting of arrhythmogenic phase-3 early afterdepolarizations in human myocytes. J Mol Cell Cardiol. 2016 07; 96:63-71. Morotti S, McCulloch AD, Bers DM, Edwards AG, Grandi E. PMID: 26241847; PMCID: PMC4734906.
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HIF1α Represses Cell Stress Pathways to Allow Proliferation of Hypoxic Fetal Cardiomyocytes. Dev Cell. 2015 Jun 08; 33(5):507-21. Guimarães-Camboa N, Stowe J, Aneas I, Sakabe N, Cattaneo P, Henderson L, Kilberg MS, Johnson RS, Chen J, McCulloch AD, Nobrega MA, Evans SM, Zambon AC. PMID: 26028220; PMCID: PMC4509618.
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Increased cell membrane capacitance is the dominant mechanism of stretch-dependent conduction slowing in the rabbit heart: a computational study. Cell Mol Bioeng. 2015 Jun 01; 8(2):237-246. de Oliveira BL, Pfeiffer ER, Sundnes J, Wall ST, McCulloch AD. PMID: 27087858; PMCID: PMC4830494.
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Multi-bio and multi-scale systems biology. Prog Biophys Mol Biol. 2015 Jan; 117(1):1-3. Henney A, Hunter P, McCulloch A, Noble D. PMID: 25783046.
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Left Ventricular Diastolic and Systolic Material Property Estimation from Image Data: LV Mechanics Challenge. Stat Atlases Comput Models Heart. 2015 Jan; 8896:63-73. Krishnamurthy A, Villongco C, Beck A, Omens J, McCulloch A. PMID: 25729778; PMCID: PMC4339056.
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Structural contributions to fibrillatory rotors in a patient-derived computational model of the atria. Europace. 2014 Nov; 16 Suppl 4:iv3-iv10. Gonzales MJ, Vincent KP, Rappel WJ, Narayan SM, McCulloch AD. PMID: 25362167; PMCID: PMC4565557.
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Computational studies of the effect of the S23D/S24D troponin I mutation on cardiac troponin structural dynamics. Biophys J. 2014 Oct 07; 107(7):1675-85. Cheng Y, Lindert S, Kekenes-Huskey P, Rao VS, Solaro RJ, Rosevear PR, Amaro R, McCulloch AD, McCammon JA, Regnier M. PMID: 25296321; PMCID: PMC4190606.
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Caveolae in ventricular myocytes are required for stretch-dependent conduction slowing. J Mol Cell Cardiol. 2014 Nov; 76:265-74. Pfeiffer ER, Wright AT, Edwards AG, Stowe JC, McNall K, Tan J, Niesman I, Patel HH, Roth DM, Omens JH, McCulloch AD. PMID: 25257915; PMCID: PMC4250283.
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Nonequilibrium reactivation of Na+ current drives early afterdepolarizations in mouse ventricle. Circ Arrhythm Electrophysiol. 2014 Dec; 7(6):1205-13. Edwards AG, Grandi E, Hake JE, Patel S, Li P, Miyamoto S, Omens JH, Heller Brown J, Bers DM, McCulloch AD. PMID: 25236710; PMCID: PMC4301603.
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Using Markov state models to develop a mechanistic understanding of protein kinase A regulatory subunit RIα activation in response to cAMP binding. J Biol Chem. 2014 Oct 24; 289(43):30040-51. Boras BW, Kornev A, Taylor SS, McCulloch AD. PMID: 25202018; PMCID: PMC4208011.
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PKA phosphorylation of cardiac troponin I modulates activation and relaxation kinetics of ventricular myofibrils. Biophys J. 2014 Sep 02; 107(5):1196-1204. Rao V, Cheng Y, Lindert S, Wang D, Oxenford L, McCulloch AD, McCammon JA, Regnier M. PMID: 25185555; PMCID: PMC4156663.
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Patient-specific modeling of ventricular activation pattern using surface ECG-derived vectorcardiogram in bundle branch block. Prog Biophys Mol Biol. 2014 Aug; 115(2-3):305-13. Villongco CT, Krummen DE, Stark P, Omens JH, McCulloch AD. PMID: 25110279; PMCID: PMC4254140.
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Timing and magnitude of systolic stretch affect myofilament activation and mechanical work. Am J Physiol Heart Circ Physiol. 2014 Aug 01; 307(3):H353-60. Tangney JR, Campbell SG, McCulloch AD, Omens JH. PMID: 24878774; PMCID: PMC4182292.
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Toward a hierarchy of mechanisms in CaMKII-mediated arrhythmia. Front Pharmacol. 2014; 5:110. Vincent KP, McCulloch AD, Edwards AG. PMID: 24994983; PMCID: PMC4062880.
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MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. BMC Bioinformatics. 2014 Mar 12; 15:69. Gan Z, Wang J, Salomonis N, Stowe JC, Haddad GG, McCulloch AD, Altintas I, Zambon AC. PMID: 24621103; PMCID: PMC3975178.
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Calcium and IP3 dynamics in cardiac myocytes: experimental and computational perspectives and approaches. Front Pharmacol. 2014; 5:35. Hohendanner F, McCulloch AD, Blatter LA, Michailova AP. PMID: 24639654; PMCID: PMC3944219.
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Targeted ablation of nesprin 1 and nesprin 2 from murine myocardium results in cardiomyopathy, altered nuclear morphology and inhibition of the biomechanical gene response. PLoS Genet. 2014 Feb; 10(2):e1004114. Banerjee I, Zhang J, Moore-Morris T, Pfeiffer E, Buchholz KS, Liu A, Ouyang K, Stroud MJ, Gerace L, Evans SM, McCulloch A, Chen J. PMID: 24586179; PMCID: PMC3930490.
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Computational modeling of subcellular transport and signaling. Curr Opin Struct Biol. 2014 Apr; 25:92-7. Hake J, Kekenes-Huskey PM, McCulloch AD. PMID: 24509246; PMCID: PMC4040296.
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Biomechanics of cardiac electromechanical coupling and mechanoelectric feedback. J Biomech Eng. 2014 Feb; 136(2):021007. Pfeiffer ER, Tangney JR, Omens JH, McCulloch AD. PMID: 24337452; PMCID: PMC4023651.
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A novel computational model of mouse myocyte electrophysiology to assess the synergy between Na+ loading and CaMKII. J Physiol. 2014 Mar 15; 592(6):1181-97. Morotti S, Edwards AG, McCulloch AD, Bers DM, Grandi E. PMID: 24421356; PMCID: PMC3961080.
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Using Kepler for Tool Integration in Microarray Analysis Workflows. Procedia Comput Sci. 2014; 29:2162-2167. Gan Z, Stowe JC, Altintas I, McCulloch AD, Zambon AC. PMID: 26605000; PMCID: PMC4655117.
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Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice. Biophys J. 2013 Nov 05; 105(9):2130-40. Kekenes-Huskey PM, Liao T, Gillette AK, Hake JE, Zhang Y, Michailova AP, McCulloch AD, McCammon JA. PMID: 24209858; PMCID: PMC3835335.
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Connexin defects underlie arrhythmogenic right ventricular cardiomyopathy in a novel mouse model. Hum Mol Genet. 2014 Mar 01; 23(5):1134-50. Lyon RC, Mezzano V, Wright AT, Pfeiffer E, Chuang J, Banares K, Castaneda A, Ouyang K, Cui L, Contu R, Gu Y, Evans SM, Omens JH, Peterson KL, McCulloch AD, Sheikh F. PMID: 24108106; PMCID: PMC3919010.
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Sensitivity of rabbit ventricular action potential and Ca²⁺ dynamics to small variations in membrane currents and ion diffusion coefficients. Biomed Res Int. 2013; 2013:565431. Lo YH, Peachey T, Abramson D, McCulloch A, Michailova A. PMID: 24222910; PMCID: PMC3814049.
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Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes. Mol Based Math Biol. 2013 Jul; 1. Liao T, Zhang Y, Kekenes-Huskey PM, Cheng Y, Michailova A, McCulloch AD, Holst M, McCammon JA. PMID: 24352481; PMCID: PMC3858848.
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Patient-Specific Models of Cardiac Biomechanics. J Comput Phys. 2013 Jul 01; 244:4-21. Krishnamurthy A, Villongco CT, Chuang J, Frank LR, Nigam V, Belezzuoli E, Stark P, Krummen DE, Narayan S, Omens JH, McCulloch AD, Kerckhoffs RC. PMID: 23729839; PMCID: PMC3667962.
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The promise of CaMKII inhibition for heart disease: preventing heart failure and arrhythmias. Expert Opin Ther Targets. 2013 Aug; 17(8):889-903. Westenbrink BD, Edwards AG, McCulloch AD, Brown JH. PMID: 23789646; PMCID: PMC5551677.
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Myofiber prestretch magnitude determines regional systolic function during ectopic activation in the tachycardia-induced failing canine heart. Am J Physiol Heart Circ Physiol. 2013 Jul 15; 305(2):H192-202. Howard EJ, Kerckhoffs RC, Vincent KP, Krishnamurthy A, Villongco CT, Mulligan LJ, McCulloch AD, Omens JH. PMID: 23666676; PMCID: PMC3726954.
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Adenylyl cyclase 6 deletion increases mortality during sustained β-adrenergic receptor stimulation. J Mol Cell Cardiol. 2013 Jul; 60:60-7. Tang T, Lai NC, Wright AT, Gao MH, Lee P, Guo T, Tang R, McCulloch AD, Hammond HK. PMID: 23587598; PMCID: PMC3987812.
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Novel role for vinculin in ventricular myocyte mechanics and dysfunction. Biophys J. 2013 Apr 02; 104(7):1623-33. Tangney JR, Chuang JS, Janssen MS, Krishnamurthy A, Liao P, Hoshijima M, Wu X, Meininger GA, Muthuchamy M, Zemljic-Harpf A, Ross RS, Frank LR, McCulloch AD, Omens JH. PMID: 23561539; PMCID: PMC3617425.
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A three-dimensional finite element model of human atrial anatomy: new methods for cubic Hermite meshes with extraordinary vertices. Med Image Anal. 2013 Jul; 17(5):525-37. Gonzales MJ, Sturgeon G, Krishnamurthy A, Hake J, Jonas R, Stark P, Rappel WJ, Narayan SM, Zhang Y, Segars WP, McCulloch AD. PMID: 23602918; PMCID: PMC3660421.
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Mechanical discoordination increases continuously after the onset of left bundle branch block despite constant electrical dyssynchrony in a computational model of cardiac electromechanics and growth. Europace. 2012 Nov; 14 Suppl 5:v65-v72. Kerckhoffs RC, Omens JH, McCulloch AD. PMID: 23104917; PMCID: PMC3482618.
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What can modelling provide to cardiac physiology? J Physiol. 2012 Sep 15; 590(18):4401-2. Smith NP, McCulloch AD, Paterson DJ. PMID: 22988258; PMCID: PMC3477748.
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Modeling effects of L-type ca(2+) current and na(+)-ca(2+) exchanger on ca(2+) trigger flux in rabbit myocytes with realistic T-tubule geometries. Front Physiol. 2012; 3:351. Kekenes-Huskey PM, Cheng Y, Hake JE, Sachse FB, Bridge JH, Holst MJ, McCammon JA, McCulloch AD, Michailova AP. PMID: 23060801; PMCID: PMC3463892.
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Slow Calcium-Depolarization-Calcium waves may initiate fast local depolarization waves in ventricular tissue. Prog Biophys Mol Biol. 2012 Oct-Nov; 110(2-3):295-304. Tveito A, Lines GT, Edwards AG, Maleckar MM, Michailova A, Hake J, McCulloch A. PMID: 22841534; PMCID: PMC3484180.
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Improved discretisation and linearisation of active tension in strongly coupled cardiac electro-mechanics simulations. Comput Methods Biomech Biomed Engin. 2014; 17(6):604-15. Sundnes J, Wall S, Osnes H, Thorvaldsen T, McCulloch AD. PMID: 22800534; PMCID: PMC4230300.
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A novel mechanism involving four-and-a-half LIM domain protein-1 and extracellular signal-regulated kinase-2 regulates titin phosphorylation and mechanics. J Biol Chem. 2012 Aug 24; 287(35):29273-84. Raskin A, Lange S, Banares K, Lyon RC, Zieseniss A, Lee LK, Yamazaki KG, Granzier HL, Gregorio CC, McCulloch AD, Omens JH, Sheikh F. PMID: 22778266; PMCID: PMC3436149.
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An atlas-based geometry pipeline for cardiac Hermite model construction and diffusion tensor reorientation. Med Image Anal. 2012 Aug; 16(6):1130-41. Zhang Y, Liang X, Ma J, Jing Y, Gonzales MJ, Villongco C, Krishnamurthy A, Frank LR, Nigam V, Stark P, Narayan SM, McCulloch AD. PMID: 22841777; PMCID: PMC3443263.
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Southern California: a hotbed of biomedical engineering: nine bioengineers describe their research and why Southern California has the biotech market cornered. IEEE Pulse. 2012 Jul; 3(4):14-21. Berger T, Meng E, George S, Khoo M, Marmarelis V, McCulloch A, Cauwenberghs G, Ohno-Machado L, Schultz J, Johnson JP. PMID: 23008840.
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Quantitative adjustment for macroprolactin is an integral part of laboratory assessment of hyperprolactinaemia. Exp Clin Endocrinol Diabetes. 2012 Jun; 120(6):376-80. Heald AH, Blantern E, Anderson SG, Radford D, Qureshi Z, Nair S, Waldron J, Davies M, McCulloch A, Kane J. PMID: 22576261.
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Modelling cardiac calcium sparks in a three-dimensional reconstruction of a calcium release unit. J Physiol. 2012 Sep 15; 590(18):4403-22. Hake J, Edwards AG, Yu Z, Kekenes-Huskey PM, Michailova AP, McCammon JA, Holst MJ, Hoshijima M, McCulloch AD. PMID: 22495592; PMCID: PMC3477749.
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Mouse and computational models link Mlc2v dephosphorylation to altered myosin kinetics in early cardiac disease. J Clin Invest. 2012 Apr; 122(4):1209-21. Sheikh F, Ouyang K, Campbell SG, Lyon RC, Chuang J, Fitzsimons D, Tangney J, Hidalgo CG, Chung CS, Cheng H, Dalton ND, Gu Y, Kasahara H, Ghassemian M, Omens JH, Peterson KL, Granzier HL, Moss RL, McCulloch AD, Chen J. PMID: 22426213; PMCID: PMC3314469.
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Statistical properties and robustness of biological controller-target networks. PLoS One. 2012; 7(1):e29374. Feala JD, Cortes J, Duxbury PM, McCulloch AD, Piermarocchi C, Paternostro G. PMID: 22235289; PMCID: PMC3250441.
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GPU acceleration of optical mapping algorithm for cardiac electrophysiology. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:1558-61. Meng P, Irturk A, Kastner R, McCulloch A, Omens J, Wright A. PMID: 23366201; PMCID: PMC3651586.
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A single strain-based growth law predicts concentric and eccentric cardiac growth during pressure and volume overload. Mech Res Commun. 2012 Jun 01; 42:40-50. Kerckhoffs RC, Omens J, McCulloch AD. PMID: 22639476; PMCID: PMC3358801.
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Early postmyocardial infarction survival in Murphy Roths Large mice is mediated by attenuated apoptosis and inflammation but depends on genetic background. Exp Physiol. 2012 Jan; 97(1):102-14. Hunt DL, Campbell PH, Zambon AC, Vranizan K, Evans SM, Kuo HC, Yamaguchi KD, Omens JH, McCulloch AD. PMID: 21967898; PMCID: PMC3253239.
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A nonlinear model of passive muscle viscosity. J Biomech Eng. 2011 Sep; 133(9):091007. Meyer GA, McCulloch AD, Lieber RL. PMID: 22010742; PMCID: PMC3705798.
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Multi-scale computational models of familial hypertrophic cardiomyopathy: genotype to phenotype. J R Soc Interface. 2011 Nov 07; 8(64):1550-61. Campbell SG, McCulloch AD. PMID: 21831889; PMCID: PMC3177620.
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Improvement in pump function with endocardial biventricular pacing increases with activation time at the left ventricular pacing site in failing canine hearts. Am J Physiol Heart Circ Physiol. 2011 Oct; 301(4):H1447-55. Howard EJ, Covell JW, Mulligan LJ, McCulloch AD, Omens JH, Kerckhoffs RC. PMID: 21784986; PMCID: PMC3197362.
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Patient-specific modeling of dyssynchronous heart failure: a case study. Prog Biophys Mol Biol. 2011 Oct; 107(1):147-55. Aguado-Sierra J, Krishnamurthy A, Villongco C, Chuang J, Howard E, Gonzales MJ, Omens J, Krummen DE, Narayan S, Kerckhoffs RC, McCulloch AD. PMID: 21763714; PMCID: PMC3190065.
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Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing. Prog Biophys Mol Biol. 2011 Oct; 107(1):4-10. Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RA, Cerbai E, Chen PS, Delmar M, Difrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P, Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV, Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova O, Taggart P, Tung L, Varró A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl P. PMID: 21745496; PMCID: PMC3190048.
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Defining candidate drug characteristics for Long-QT (LQT3) syndrome. Math Biosci Eng. 2011 Jul; 8(3):861-73. Tveito A, Lines GT, Li P, McCulloch A. PMID: 21675815.
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Policy needs and options for a common approach towards modelling and simulation of human physiology and diseases with a focus on the virtual physiological human. Stud Health Technol Inform. 2011; 170:49-82. Viceconti M, McCulloch AD. PMID: 21893899.
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Determination of three-dimensional ventricular strain distributions in gene-targeted mice using tagged MRI. Magn Reson Med. 2010 Nov; 64(5):1281-8. Chuang JS, Zemljic-Harpf A, Ross RS, Frank LR, McCulloch AD, Omens JH. PMID: 20981782; PMCID: PMC3272305.
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Numerical analysis of Ca2+ signaling in rat ventricular myocytes with realistic transverse-axial tubular geometry and inhibited sarcoplasmic reticulum. PLoS Comput Biol. 2010 Oct 28; 6(10):e1000972. Cheng Y, Yu Z, Hoshijima M, Holst MJ, McCulloch AD, McCammon JA, Michailova AP. PMID: 21060856; PMCID: PMC2965743.
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Coupling of adjacent tropomyosins enhances cross-bridge-mediated cooperative activation in a markov model of the cardiac thin filament. Biophys J. 2010 May 19; 98(10):2254-64. Campbell SG, Lionetti FV, Campbell KS, McCulloch AD. PMID: 20483334; PMCID: PMC2872217.
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Ventricular dilation and electrical dyssynchrony synergistically increase regional mechanical nonuniformity but not mechanical dyssynchrony: a computational model. Circ Heart Fail. 2010 Jul; 3(4):528-36. Kerckhoffs RC, Omens JH, McCulloch AD, Mulligan LJ. PMID: 20466849; PMCID: PMC3050711.
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Systems approaches and algorithms for discovery of combinatorial therapies. Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr; 2(2):181-193. Feala JD, Cortes J, Duxbury PM, Piermarocchi C, McCulloch AD, Paternostro G. PMID: 20836021.
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Cardiac myocyte force development during differentiation and maturation. Ann N Y Acad Sci. 2010 Feb; 1188:121-7. Jacot JG, Kita-Matsuo H, Wei KA, Chen HS, Omens JH, Mercola M, McCulloch AD. PMID: 20201894; PMCID: PMC2920416.
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Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis. BMC Syst Biol. 2009 Sep 09; 3:91. Feala JD, Coquin L, Zhou D, Haddad GG, Paternostro G, McCulloch AD. PMID: 19740440; PMCID: PMC2749811.
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Hypertrophic gene expression induced by chronic stretch of excised mouse heart muscle. Mol Cell Biomech. 2009 Sep; 6(3):145-59. Raskin AM, Hoshijima M, Swanson E, McCulloch AD, Omens JH. PMID: 19670825; PMCID: PMC3272304.
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Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes. PLoS One. 2009; 4(4):e5046. Kita-Matsuo H, Barcova M, Prigozhina N, Salomonis N, Wei K, Jacot JG, Nelson B, Spiering S, Haverslag R, Kim C, Talantova M, Bajpai R, Calzolari D, Terskikh A, McCulloch AD, Price JH, Conklin BR, Chen HS, Mercola M. PMID: 19352491; PMCID: PMC2662416.
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Multiscale modeling in rodent ventricular myocytes. IEEE Eng Med Biol Mag. 2009 Mar-Apr; 28(2):46-57. Lu S, Michailova A, Saucerman J, Cheng Y, Yu Z, Kaiser T, Li W, Bank R, Holst M, McCammon J, Hayashi T, Hoshijima M, Arzberger P, McCulloch A. PMID: 19349251; PMCID: PMC3197248.
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Effect of transmurally heterogeneous myocyte excitation-contraction coupling on canine left ventricular electromechanics. Exp Physiol. 2009 May; 94(5):541-52. Campbell SG, Howard E, Aguado-Sierra J, Coppola BA, Omens JH, Mulligan LJ, McCulloch AD, Kerckhoffs RC. PMID: 19251984; PMCID: PMC2744637.
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Multi-scale modeling of excitation-contraction coupling in the normal and failing heart. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:4281-2. Kerckhoffs RC, Campbell SG, Flaim SN, Howard EJ, Sierra-Aguado J, Mulligan LJ, McCulloch AD. PMID: 19963818; PMCID: PMC2896048.
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Search algorithms as a framework for the optimization of drug combinations. PLoS Comput Biol. 2008 Dec; 4(12):e1000249. Calzolari D, Bruschi S, Coquin L, Schofield J, Feala JD, Reed JC, McCulloch AD, Paternostro G. PMID: 19112483; PMCID: PMC2590660.
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Metabolomic and flux-balance analysis of age-related decline of hypoxia tolerance in Drosophila muscle tissue. Mol Syst Biol. 2008; 4:233. Coquin L, Feala JD, McCulloch AD, Paternostro G. PMID: 19096360; PMCID: PMC2615305.
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An FHL1-containing complex within the cardiomyocyte sarcomere mediates hypertrophic biomechanical stress responses in mice. J Clin Invest. 2008 Dec; 118(12):3870-80. Sheikh F, Raskin A, Chu PH, Lange S, Domenighetti AA, Zheng M, Liang X, Zhang T, Yajima T, Gu Y, Dalton ND, Mahata SK, Dorn GW, Brown JH, Heller-Brown J, Peterson KL, Omens JH, McCulloch AD, Chen J. PMID: 19033658; PMCID: PMC2575833.
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Mechanisms of transmurally varying myocyte electromechanics in an integrated computational model. Philos Trans A Math Phys Eng Sci. 2008 Sep 28; 366(1879):3361-80. Campbell SG, Flaim SN, Leem CH, McCulloch AD. PMID: 18593662; PMCID: PMC2556206.
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Systems approach to understanding electromechanical activity in the human heart: a national heart, lung, and blood institute workshop summary. Circulation. 2008 Sep 09; 118(11):1202-11. Rudy Y, Ackerman MJ, Bers DM, Clancy CE, Houser SR, London B, McCulloch AD, Przywara DA, Rasmusson RL, Solaro RJ, Trayanova NA, Van Wagoner DR, Varró A, Weiss JN, Lathrop DA. PMID: 18779456; PMCID: PMC2908516.
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Coxsackievirus and adenovirus receptor (CAR) mediates atrioventricular-node function and connexin 45 localization in the murine heart. J Clin Invest. 2008 Aug; 118(8):2758-70. Lim BK, Xiong D, Dorner A, Youn TJ, Yung A, Liu TI, Gu Y, Dalton ND, Wright AT, Evans SM, Chen J, Peterson KL, McCulloch AD, Yajima T, Knowlton KU. PMID: 18636119; PMCID: PMC2467382.
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Mechanisms of conduction slowing during myocardial stretch by ventricular volume loading in the rabbit. Am J Physiol Heart Circ Physiol. 2008 Sep; 295(3):H1270-H1278. Mills RW, Narayan SM, McCulloch AD. PMID: 18660447; PMCID: PMC2544493.
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Effects of biventricular pacing and scar size in a computational model of the failing heart with left bundle branch block. Med Image Anal. 2009 Apr; 13(2):362-9. Kerckhoffs RC, McCulloch AD, Omens JH, Mulligan LJ. PMID: 18675578; PMCID: PMC2796510.
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Computational modeling for bedside application. Heart Fail Clin. 2008 Jul; 4(3):371-8. Kerckhoffs RC, Narayan SM, Omens JH, Mulligan LJ, McCulloch AD. PMID: 18598988; PMCID: PMC2518746.
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Substrate stiffness affects the functional maturation of neonatal rat ventricular myocytes. Biophys J. 2008 Oct; 95(7):3479-87. Jacot JG, McCulloch AD, Omens JH. PMID: 18586852; PMCID: PMC2547444.
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A myocardial lineage derives from Tbx18 epicardial cells. Nature. 2008 Jul 03; 454(7200):104-8. Cai CL, Martin JC, Sun Y, Cui L, Wang L, Ouyang K, Yang L, Bu L, Liang X, Zhang X, Stallcup WB, Denton CP, McCulloch A, Chen J, Evans SM. PMID: 18480752; PMCID: PMC5540369.
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Single nucleotide polymorphisms in human Paneth cell defensin A5 may confer susceptibility to inflammatory bowel disease in a New Zealand Caucasian population. Dig Liver Dis. 2008 Sep; 40(9):723-30. Ferguson LR, Browning BL, Huebner C, Petermann I, Shelling AN, Demmers P, McCulloch A, Gearry RB, Barclay ML, Philpott M. PMID: 18394979.
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Cardiac resynchronization: insight from experimental and computational models. Prog Biophys Mol Biol. 2008 Jun-Jul; 97(2-3):543-61. Kerckhoffs RC, Lumens J, Vernooy K, Omens JH, Mulligan LJ, Delhaas T, Arts T, McCulloch AD, Prinzen FW. PMID: 18417196; PMCID: PMC2676869.
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Discovering regulators of the Drosophila cardiac hypoxia response using automated phenotyping technology. Ann N Y Acad Sci. 2008 Mar; 1123:169-77. Feala JD, Omens JH, Paternostro G, McCulloch AD. PMID: 18375589.
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Effects of Mg2+, pH and PCr on cardiac excitation-metabolic coupling. Magnes Res. 2008 Mar; 21(1):16-28. Michailova A, McCulloch AD. PMID: 18557130.
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Effects of biglycan deficiency on myocardial infarct structure and mechanics. Mol Cell Biomech. 2008 Mar; 5(1):27-35. Campbell PH, Hunt DL, Jones Y, Harwood F, Amiel D, Omens JH, McCulloch AD. PMID: 18524244; PMCID: PMC2679639.
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The role of mechanoelectric feedback in vulnerability to electric shock. Prog Biophys Mol Biol. 2008 Jun-Jul; 97(2-3):461-78. Li W, Gurev V, McCulloch AD, Trayanova NA. PMID: 18374394; PMCID: PMC2517254.
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Cell cultures as models of cardiac mechanoelectric feedback. Prog Biophys Mol Biol. 2008 Jun-Jul; 97(2-3):367-82. Zhang Y, Sekar RB, McCulloch AD, Tung L. PMID: 18384846; PMCID: PMC2733372.
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Acetylcholine-induced shortening of the epicardial action potential duration may increase repolarization gradients and LQT3 arrhythmic risk. J Electrocardiol. 2007 Nov-Dec; 40(6 Suppl):S66-9. Flaim SN, McCulloch AD. PMID: 17993332.
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Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Mol Cell Biol. 2007 Nov; 27(21):7522-37. Zemljic-Harpf AE, Miller JC, Henderson SA, Wright AT, Manso AM, Elsherif L, Dalton ND, Thor AK, Perkins GA, McCulloch AD, Ross RS. PMID: 17785437; PMCID: PMC2169049.
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Integrating metabolomics and phenomics with systems models of cardiac hypoxia. Prog Biophys Mol Biol. 2008 Jan-Apr; 96(1-3):209-25. Feala JD, Coquin L, Paternostro G, McCulloch AD. PMID: 17870149.
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Asynchrony of ventricular activation affects magnitude and timing of fiber stretch in late-activated regions of the canine heart. Am J Physiol Heart Circ Physiol. 2007 Jul; 293(1):H754-61. Coppola BA, Covell JW, McCulloch AD, Omens JH. PMID: 17449547; PMCID: PMC3328414.
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Flexibility in energy metabolism supports hypoxia tolerance in Drosophila flight muscle: metabolomic and computational systems analysis. Mol Syst Biol. 2007; 3:99. Feala JD, Coquin L, McCulloch AD, Paternostro G. PMID: 17437024; PMCID: PMC1865581.
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High-resolution longitudinal MRI of the transition to heart failure. Magn Reson Med. 2007 Apr; 57(4):714-20. Costandi PN, McCulloch AD, Omens JH, Frank LR. PMID: 17390366; PMCID: PMC4482467.
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Modeling transmural heterogeneity of K(ATP) current in rabbit ventricular myocytes. Am J Physiol Cell Physiol. 2007 Aug; 293(2):C542-57. Michailova A, Lorentz W, McCulloch A. PMID: 17329404.
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Arrhythmogenic consequences of Na+ channel mutations in the transmurally heterogeneous mammalian left ventricle: analysis of the I1768V SCN5A mutation. Heart Rhythm. 2007 Jun; 4(6):768-78. Flaim SN, Giles WR, McCulloch AD. PMID: 17556201.
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Coupling of a 3D finite element model of cardiac ventricular mechanics to lumped systems models of the systemic and pulmonic circulation. Ann Biomed Eng. 2007 Jan; 35(1):1-18. Kerckhoffs RC, Neal ML, Gu Q, Bassingthwaighte JB, Omens JH, McCulloch AD. PMID: 17111210; PMCID: PMC2872168.
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Cardiac beta-adrenergic signaling: from subcellular microdomains to heart failure. Ann N Y Acad Sci. 2006 Oct; 1080:348-61. Saucerman JJ, McCulloch AD. PMID: 17132794.
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Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes. Proc Natl Acad Sci U S A. 2006 Aug 22; 103(34):12923-8. Saucerman JJ, Zhang J, Martin JC, Peng LX, Stenbit AE, Tsien RY, McCulloch AD. PMID: 16905651; PMCID: PMC1568947.
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Role of diastolic properties in the transition to failure in a mouse model of the cardiac dilatation. Am J Physiol Heart Circ Physiol. 2006 Dec; 291(6):H2971-9. Costandi PN, Frank LR, McCulloch AD, Omens JH. PMID: 16861693; PMCID: PMC3334322.
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Contributions of sustained INa and IKv43 to transmural heterogeneity of early repolarization and arrhythmogenesis in canine left ventricular myocytes. Am J Physiol Heart Circ Physiol. 2006 Dec; 291(6):H2617-29. Flaim SN, Giles WR, McCulloch AD. PMID: 16829642.
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Myocyte shearing, myocardial sheets, and microtubules. Circ Res. 2006 Jan 06; 98(1):1-3. McCulloch AD, Omens JH. PMID: 16397149.
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Micropatterned cell cultures on elastic membranes as an in vitro model of myocardium. Nat Protoc. 2006; 1(3):1379-91. Camelliti P, Gallagher JO, Kohl P, McCulloch AD. PMID: 17406425.
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Chronotropic response of cultured neonatal rat ventricular myocytes to short-term fluid shear. Cell Biochem Biophys. 2006; 46(2):113-22. Lorenzen-Schmidt I, Schmid-Schönbein GW, Giles WR, McCulloch AD, Chien S, Omens JH. PMID: 17012753; PMCID: PMC3310206.
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An ionic model of stretch-activated and stretch-modulated currents in rabbit ventricular myocytes. Europace. 2005 Sep; 7 Suppl 2:128-34. Healy SN, McCulloch AD. PMID: 16102510.
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Young MLP deficient mice show diastolic dysfunction before the onset of dilated cardiomyopathy. J Mol Cell Cardiol. 2005 Aug; 39(2):241-50. Lorenzen-Schmidt I, Stuyvers BD, ter Keurs HE, Date MO, Hoshijima M, Chien KR, McCulloch AD, Omens JH. PMID: 15978612; PMCID: PMC4484861.
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Cell proliferation rates in an artificial tissue-engineered environment. Cell Prolif. 2005 Aug; 38(4):215-21. Sarraf CE, Harris AB, McCulloch AD, Eastwood M. PMID: 16098181; PMCID: PMC6496514.
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Deficiency of actinin-associated LIM protein alters regional right ventricular function and hypertrophic remodeling. Ann Biomed Eng. 2005 Jul; 33(7):888-96. Lorenzen-Schmidt I, McCulloch AD, Omens JH. PMID: 16060528; PMCID: PMC4482468.
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Cardiac systems biology. Ann N Y Acad Sci. 2005 Jun; 1047:283-95. McCulloch AD, Paternostro G. PMID: 16093504.
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Microstructured cocultures of cardiac myocytes and fibroblasts: a two-dimensional in vitro model of cardiac tissue. Microsc Microanal. 2005 Jun; 11(3):249-59. Camelliti P, McCulloch AD, Kohl P. PMID: 16060978.
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Modeling regulation of cardiac KATP and L-type Ca2+ currents by ATP, ADP, and Mg2+. Biophys J. 2005 Mar; 88(3):2234-49. Michailova A, Saucerman J, Belik ME, McCulloch AD. PMID: 15738467; PMCID: PMC1305273.
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Functionally and structurally integrated computational modeling of ventricular physiology. Jpn J Physiol. 2004 Dec; 54(6):531-9. McCulloch AD. PMID: 15760485.
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Nonhomogeneous deformation in the anterior leaflet of the mitral valve. Ann Biomed Eng. 2004 Dec; 32(12):1599-606. Chen L, McCulloch AD, May-Newman K. PMID: 15675673.
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Proarrhythmic consequences of a KCNQ1 AKAP-binding domain mutation: computational models of whole cells and heterogeneous tissue. Circ Res. 2004 Dec 10; 95(12):1216-24. Saucerman JJ, Healy SN, Belik ME, Puglisi JL, McCulloch AD. PMID: 15528464.
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Left ventricular form and function: scientific priorities and strategic planning for development of new views of disease. Circulation. 2004 Oct 05; 110(14):e333-6. Buckberg GD, Weisfeldt ML, Ballester M, Beyar R, Burkhoff D, Coghlan HC, Doyle M, Epstein ND, Gharib M, Ideker RE, Ingels NB, LeWinter MM, McCulloch AD, Pohost GM, Reinlib LJ, Sahn DJ, Sopko G, Spinale FG, Spotnitz HM, Torrent-Guasp F, Shapiro EP. PMID: 15466651.
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Effects of magnesium on cardiac excitation-contraction coupling. J Am Coll Nutr. 2004 Oct; 23(5):514S-517S. Michailova AP, Belik ME, McCulloch AD. PMID: 15466954.
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A more efficient search strategy for aging genes based on connectivity. Bioinformatics. 2005 Feb 01; 21(3):338-48. Ferrarini L, Bertelli L, Feala J, McCulloch AD, Paternostro G. PMID: 15347572.
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Mechanistic systems models of cell signaling networks: a case study of myocyte adrenergic regulation. Prog Biophys Mol Biol. 2004 Jun-Jul; 85(2-3):261-78. Saucerman JJ, McCulloch AD. PMID: 15142747.
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Structural and functional roles of desmin in mouse skeletal muscle during passive deformation. Biophys J. 2004 May; 86(5):2993-3008. Shah SB, Davis J, Weisleder N, Kostavassili I, McCulloch AD, Ralston E, Capetanaki Y, Lieber RL. PMID: 15111414; PMCID: PMC1304166.
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New multi-cue bioreactor for tissue engineering of tubular cardiovascular samples under physiological conditions. Tissue Eng. 2004 Mar-Apr; 10(3-4):565-73. McCulloch AD, Harris AB, Sarraf CE, Eastwood M. PMID: 15165473.
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Relationship between regional shortening and asynchronous electrical activation in a three-dimensional model of ventricular electromechanics. J Cardiovasc Electrophysiol. 2003 Oct; 14(10 Suppl):S196-202. Usyk TP, McCulloch AD. PMID: 14760924.
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Heart valve and arterial tissue engineering. Cell Prolif. 2003 Oct; 36(5):241-54. Sarraf CE, Harris AB, McCulloch AD, Eastwood M. PMID: 14521518; PMCID: PMC6496809.
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Modeling beta-adrenergic control of cardiac myocyte contractility in silico. J Biol Chem. 2003 Nov 28; 278(48):47997-8003. Saucerman JJ, Brunton LL, Michailova AP, McCulloch AD. PMID: 12972422.
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Ventricular filling slows epicardial conduction and increases action potential duration in an optical mapping study of the isolated rabbit heart. J Cardiovasc Electrophysiol. 2003 Jul; 14(7):739-49. Sung D, Mills RW, Schettler J, Narayan SM, Omens JH, McCulloch AD. PMID: 12930255.
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Complex distributions of residual stress and strain in the mouse left ventricle: experimental and theoretical models. Biomech Model Mechanobiol. 2003 Apr; 1(4):267-77. Omens JH, McCulloch AD, Criscione JC. PMID: 14586695.
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Electromechanical model of cardiac resynchronization in the dilated failing heart with left bundle branch block. J Electrocardiol. 2003; 36 Suppl:57-61. Usyk TP, McCulloch AD. PMID: 14716593.
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The cardiac mechanical stretch sensor machinery involves a Z disc complex that is defective in a subset of human dilated cardiomyopathy. Cell. 2002 Dec 27; 111(7):943-55. Knöll R, Hoshijima M, Hoffman HM, Person V, Lorenzen-Schmidt I, Bang ML, Hayashi T, Shiga N, Yasukawa H, Schaper W, McKenna W, Yokoyama M, Schork NJ, Omens JH, McCulloch AD, Kimura A, Gregorio CC, Poller W, Schaper J, Schultheiss HP, Chien KR. PMID: 12507422.
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Glycated collagen cross-linking alters cardiac mechanics in volume-overload hypertrophy. Am J Physiol Heart Circ Physiol. 2003 Apr; 284(4):H1277-84. Herrmann KL, McCulloch AD, Omens JH. PMID: 12595292; PMCID: PMC3325795.
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Dance band on the Titanic: biomechanical signaling in cardiac hypertrophy. Circ Res. 2002 Nov 15; 91(10):888-98. Sussman MA, McCulloch A, Borg TK. PMID: 12433833.
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Effect of stimulation rate, sarcomere length and Ca(2+) on force generation by mouse cardiac muscle. J Physiol. 2002 11 01; 544(3):817-30. Stuyvers BD, McCulloch AD, Guo J, Duff HJ, ter Keurs HE. PMID: 12411526; PMCID: PMC2290620.
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Muscle LIM protein deficiency leads to alterations in passive ventricular mechanics. Am J Physiol Heart Circ Physiol. 2002 Feb; 282(2):H680-7. Omens JH, Usyk TP, Li Z, McCulloch AD. PMID: 11788418.
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Integrative biological modelling in silico. Novartis Found Symp. 2002; 247:4-19; discussion 20-5, 84-90, 244-52. McCulloch AD, Huber G. PMID: 12539946.
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Tissue engineering of biological cardiovascular system surrogates. Heart Lung Circ. 2002; 11(3):142-50; discussion 151. Sarraf CE, Harris AB, McCulloch AD, Eastwood M. PMID: 16352087.
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In vivo finite element model-based image analysis of pacemaker lead mechanics. Med Image Anal. 2001 Dec; 5(4):255-70. Baxter WW, McCulloch AD. PMID: 11731305.
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Phase shifting prior to spatial filtering enhances optical recordings of cardiac action potential propagation. Ann Biomed Eng. 2001 Oct; 29(10):854-61. Sung D, Mills R, McCulloch AD. PMID: 11764316.
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Oesophageal morphometry and residual strain in a mouse model of osteogenesis imperfecta. Neurogastroenterol Motil. 2001 Oct; 13(5):457-64. Gregersen H, Weis SM, McCulloch AD. PMID: 11696107.
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Regional septal dysfunction in a three-dimensional computational model of focal myofiber disarray. Am J Physiol Heart Circ Physiol. 2001 Aug; 281(2):H506-14. Usyk TP, Omens JH, McCulloch AD. PMID: 11454551.
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Model study of ATP and ADP buffering, transport of Ca(2+) and Mg(2+), and regulation of ion pumps in ventricular myocyte. Biophys J. 2001 Aug; 81(2):614-29. Michailova A, McCulloch A. PMID: 11463611; PMCID: PMC1301539.
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Regional myocardial mechanics: integrative computational models of flow-function relations. J Nucl Cardiol. 2001 Jul-Aug; 8(4):506-19. McCulloch AD, Mazhari R. PMID: 11481573.
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Age-associated cardiac dysfunction in Drosophila melanogaster. Circ Res. 2001 May 25; 88(10):1053-8. Paternostro G, Vignola C, Bartsch DU, Omens JH, McCulloch AD, Reed JC. PMID: 11375275.
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Evidence for substantial variations of atmospheric hydroxyl radicals in the past two decades. Science. 2001 Jun 08; 292(5523):1882-8. Prinn RG, Huang J, Weiss RF, Cunnold DM, Fraser PJ, Simmonds PG, McCulloch A, Harth C, Salameh P, O'Doherty S, Wang RH, Porter L, Miller BR. PMID: 11337586.
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Relating myocardial laminar architecture to shear strain and muscle fiber orientation. Am J Physiol Heart Circ Physiol. 2001 May; 280(5):H2222-9. Arts T, Costa KD, Covell JW, McCulloch AD. PMID: 11299225.
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Mechanoelectric feedback in a model of the passively inflated left ventricle. Ann Biomed Eng. 2001 May; 29(5):414-26. Vetter FJ, McCulloch AD. PMID: 11400722.
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Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints. Am J Physiol Regul Integr Comp Physiol. 2001 Mar; 280(3):R695-704. Ramakrishna R, Edwards JS, McCulloch A, Palsson BO. PMID: 11171647.
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Regional heterogeneity of function in nonischemic dilated cardiomyopathy. Cardiovasc Res. 2001 Feb 01; 49(2):308-18. Young AA, Dokos S, Powell KA, Sturm B, McCulloch AD, Starling RC, McCarthy PM, White RD. PMID: 11164841.
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Myocardial mechanics and collagen structure in the osteogenesis imperfecta murine (oim). Circ Res. 2000 Oct 13; 87(8):663-9. Weis SM, Emery JL, Becker KD, McBride DJ, Omens JH, McCulloch AD. PMID: 11029401.
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Model-based analysis of optically mapped epicardial activation patterns and conduction velocity. Ann Biomed Eng. 2000 Sep; 28(9):1085-92. Sung D, Omens JH, McCulloch AD. PMID: 11132192.
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Modeling the human cardiome in silico. J Nucl Cardiol. 2000 Sep-Oct; 7(5):496-9. McCulloch AD. PMID: 11083199.
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Integrative models for understanding the structural basis of regional mechanical dysfunction in ischemic myocardium. Ann Biomed Eng. 2000 Aug; 28(8):979-90. Mazhari R, McCulloch AD. PMID: 11144683.
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Three-dimensional stress and strain in passive rabbit left ventricle: a model study. Ann Biomed Eng. 2000 Jul; 28(7):781-92. Vetter FJ, McCulloch AD. PMID: 11016415.
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Regional dysfunction correlates with myofiber disarray in transgenic mice with ventricular expression of ras. Am J Physiol Heart Circ Physiol. 2000 Mar; 278(3):H898-906. Karlon WJ, McCulloch AD, Covell JW, Hunter JJ, Omens JH. PMID: 10710359; PMCID: PMC3328188.
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Imaging three-dimensional cardiac function. Annu Rev Biomed Eng. 2000; 2:431-56. O'Dell WG, McCulloch AD. PMID: 11701519.
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Differential responses of adult cardiac fibroblasts to in vitro biaxial strain patterns. J Mol Cell Cardiol. 1999 Oct; 31(10):1833-43. Lee AA, Delhaas T, McCulloch AD, Villarreal FJ. PMID: 10525421.
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Laminar fiber architecture and three-dimensional systolic mechanics in canine ventricular myocardium. Am J Physiol. 1999 02; 276(2):H595-607. Costa KD, Takayama Y, McCulloch AD, Covell JW. PMID: 9950861.
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Residual strain in ischemic ventricular myocardium. J Biomech Eng. 1998 Dec; 120(6):710-4. Summerour SR, Emery JL, Fazeli B, Omens JH, McCulloch AD. PMID: 10412453.
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Left ventricular geometric remodeling and residual stress in the rat heart. J Biomech Eng. 1998 Dec; 120(6):715-9. Omens JH, Vaplon SM, Fazeli B, McCulloch AD. PMID: 10412454.
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Regional myocardial perfusion and mechanics: a model-based method of analysis. Ann Biomed Eng. 1998 Sep-Oct; 26(5):743-55. Mazhari R, Omens JH, Waldman LK, McCulloch AD. PMID: 9779946.
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History-dependent mechanical behavior of guinea-pig small intestine. Ann Biomed Eng. 1998 Sep-Oct; 26(5):850-8. Gregersen H, Emery JL, McCulloch AD. PMID: 9779958.
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Mechanisms of length history-dependent tension in an ionic model of the cardiac myocyte. Am J Physiol. 1998 03; 274(3):H1032-40. Bluhm WF, Lew WY, Garfinkel A, McCulloch AD. PMID: 9530218.
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Flow-function relations during graded coronary occlusions in the dog: effects of transmural location and segment orientation. Cardiovasc Res. 1998 Mar; 37(3):636-45. McCulloch AD, Sung D, Wilson JM, Pavelec RS, Omens JH. PMID: 9659447.
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Anterior-posterior strain variation in normally hydrated and swollen rabbit cornea. Invest Ophthalmol Vis Sci. 1998 Feb; 39(2):253-62. Hennighausen H, Feldman ST, Bille JF, McCulloch AD. PMID: 9477981.
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Computational biology of the heart: from structure to function. Prog Biophys Mol Biol. 1998; 69(2-3):153-5. McCulloch A, Bassingthwaighte J, Hunter P, Noble D. PMID: 9785936; PMCID: PMC4128782.
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Three-dimensional analysis of regional cardiac function: a model of rabbit ventricular anatomy. Prog Biophys Mol Biol. 1998; 69(2-3):157-83. Vetter FJ, McCulloch AD. PMID: 9785937.
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Modelling the mechanical properties of cardiac muscle. Prog Biophys Mol Biol. 1998; 69(2-3):289-331. Hunter PJ, McCulloch AD, ter Keurs HE. PMID: 9785944.
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Homogenization modeling for the mechanics of perfused myocardium. Prog Biophys Mol Biol. 1998; 69(2-3):463-81. May-Newman K, McCulloch AD. PMID: 9785951.
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Cellular mechanisms for the slow phase of the Frank-Starling response. J Electrocardiol. 1998; 31 Suppl:13-22. Bluhm WF, Sung D, Lew WY, Garfinkel A, McCulloch AD. PMID: 9988000.
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Three-dimensional residual strain in midanterior canine left ventricle. Am J Physiol. 1997 10; 273(4):H1968-76. Costa KD, May-Newman K, Farr D, O'Dell WG, McCulloch AD, Omens JH. PMID: 9362268; PMCID: PMC3343007.
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Microstructural model of perimysial collagen fibers for resting myocardial mechanics during ventricular filling. Am J Physiol. 1997 Sep; 273(3 Pt 2):H1576-86. MacKenna DA, Vaplon SM, McCulloch AD. PMID: 9321852.
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Biaxial mechanics of the passively overstretched left ventricle. Am J Physiol. 1997 May; 272(5 Pt 2):H2299-305. Emery JL, Omens JH, McCulloch AD. PMID: 9176298.
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Strain softening in rat left ventricular myocardium. J Biomech Eng. 1997 Feb; 119(1):6-12. Emery JL, Omens JH, McCulloch AD. PMID: 9083843.
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Anterior and posterior left ventricular sarcomere lengths behave similarly during ejection. Am J Physiol. 1997 Jan; 272(1 Pt 2):H469-77. Guccione JM, O'Dell WG, McCulloch AD, Hunter WC. PMID: 9038969.
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Multiaxial myocardial mechanics and extracellular matrix remodeling: mechanochemical regulation of cardiac fibroblast function. Adv Exp Med Biol. 1997; 430:227-40. Lee AA, McCulloch AD. PMID: 9330732.
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A three-dimensional finite element method for large elastic deformations of ventricular myocardium: I--Cylindrical and spherical polar coordinates. J Biomech Eng. 1996 Nov; 118(4):452-63. Costa KD, Hunter PJ, Rogers JM, Guccione JM, Waldman LK, McCulloch AD. PMID: 8950648.
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A three-dimensional finite element method for large elastic deformations of ventricular myocardium: II--Prolate spheroidal coordinates. J Biomech Eng. 1996 Nov; 118(4):464-72. Costa KD, Hunter PJ, Wayne JS, Waldman LK, Guccione JM, McCulloch AD. PMID: 8950649.
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An equibiaxial strain system for cultured cells. Am J Physiol. 1996 Oct; 271(4 Pt 1):C1400-8. Lee AA, Delhaas T, Waldman LK, MacKenna DA, Villarreal FJ, McCulloch AD. PMID: 8897847.
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Transmural changes in stress-free myocyte morphology during pressure overload hypertrophy in the rat. J Mol Cell Cardiol. 1996 Sep; 28(9):1975-83. Omens JH, Rodriguez EK, McCulloch AD. PMID: 8899556.
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Comparison of two techniques for measuring two-dimensional strain in rat left ventricles. Am J Physiol. 1996 Sep; 271(3 Pt 2):H1256-61. Omens JH, Farr DD, McCulloch AD, Waldman LK. PMID: 8853366.
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Distributed mechanics of the canine right ventricle: effects of varying preload. J Biomech. 1996 Mar; 29(3):373-81. Waldman LK, Allen JJ, Pavelec RS, McCulloch AD. PMID: 8850643.
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Transmural distribution of capillary morphology as a function of coronary perfusion pressure in the resting canine heart. Microvasc Res. 1995 Nov; 50(3):381-96. May-Newman K, Mathieu-Costello O, Omens JH, Klumb K, McCulloch AD. PMID: 8583952.
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Angiotensin II stimulates the autocrine production of transforming growth factor-beta 1 in adult rat cardiac fibroblasts. J Mol Cell Cardiol. 1995 Oct; 27(10):2347-57. Lee AA, Dillmann WH, McCulloch AD, Villarreal FJ. PMID: 8576949.
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Finite element stress analysis of left ventricular mechanics in the beating dog heart. J Biomech. 1995 Oct; 28(10):1167-77. Guccione JM, Costa KD, McCulloch AD. PMID: 8550635.
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Active force in rabbit ventricular myocytes. J Biomech. 1995 Sep; 28(9):1119-22. Bluhm WF, McCulloch AD, Lew WY. PMID: 7559682.
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Gradients of epicardial strain across the perfusion boundary during acute myocardial ischemia. Am J Physiol. 1994 Dec; 267(6 Pt 2):H2348-62. Van Leuven SL, Waldman LK, McCulloch AD, Covell JW. PMID: 7810735.
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A collocation--Galerkin finite element model of cardiac action potential propagation. IEEE Trans Biomed Eng. 1994 Aug; 41(8):743-57. Rogers JM, McCulloch AD. PMID: 7927397.
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Three-dimensional transmural mechanical interaction between the coronary vasculature and passive myocardium in the dog. Circ Res. 1994 Jun; 74(6):1166-78. May-Newman K, Omens JH, Pavelec RS, McCulloch AD. PMID: 8187283.
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Nonuniform muscle fiber orientation causes spiral wave drift in a finite element model of cardiac action potential propagation. J Cardiovasc Electrophysiol. 1994 Jun; 5(6):496-509. Rogers JM, McCulloch AD. PMID: 8087294.
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Stress-dependent finite growth in soft elastic tissues. J Biomech. 1994 Apr; 27(4):455-67. Rodriguez EK, Hoger A, McCulloch AD. PMID: 8188726.
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Nonhomogeneous ventricular wall strain: analysis of errors and accuracy. J Biomech Eng. 1993 Nov; 115(4B):497-502. Waldman LK, McCulloch AD. PMID: 8302031.
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Measurement of strain and analysis of stress in resting rat left ventricular myocardium. J Biomech. 1993 Jun; 26(6):665-76. Omens JH, MacKenna DA, McCulloch AD. PMID: 8514812.
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Effect of residual stress on transmural sarcomere length distributions in rat left ventricle. Am J Physiol. 1993 Apr; 264(4 Pt 2):H1048-56. Rodriguez EK, Omens JH, Waldman LK, McCulloch AD. PMID: 8476082.
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Mechanics of active contraction in cardiac muscle: Part II--Cylindrical models of the systolic left ventricle. J Biomech Eng. 1993 Feb; 115(1):82-90. Guccione JM, Waldman LK, McCulloch AD. PMID: 8445902.
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Mechanics of active contraction in cardiac muscle: Part I--Constitutive relations for fiber stress that describe deactivation. J Biomech Eng. 1993 Feb; 115(1):72-81. Guccione JM, McCulloch AD. PMID: 8445901.
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Nonhomogeneous analysis of epicardial strain distributions during acute myocardial ischemia in the dog. J Biomech. 1993 Jan; 26(1):19-35. Hashima AR, Young AA, McCulloch AD, Waldman LK. PMID: 8423166.
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Mechanical effects of coronary perfusion in the passive canine left ventricle. Am J Physiol. 1992 Feb; 262(2 Pt 2):H523-30. McCulloch AD, Hunter PJ, Smaill BH. PMID: 1539711.
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Large-scale finite element analysis of the beating heart. Crit Rev Biomed Eng. 1992; 20(5-6):427-49. McCulloch A, Waldman L, Rogers J, Guccione J. PMID: 1486784.
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Transmural distribution of three-dimensional strain in the isolated arrested canine left ventricle. Am J Physiol. 1991 Sep; 261(3 Pt 2):H918-28. Omens JH, May KD, McCulloch AD. PMID: 1887936.
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Passive material properties of intact ventricular myocardium determined from a cylindrical model. J Biomech Eng. 1991 Feb; 113(1):42-55. Guccione JM, McCulloch AD, Waldman LK. PMID: 2020175.
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Non-homogeneous analysis of three-dimensional transmural finite deformation in canine ventricular myocardium. J Biomech. 1991; 24(7):539-48. McCulloch AD, Omens JH. PMID: 1880138.
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Regional left ventricular epicardial deformation in the passive dog heart. Circ Res. 1989 Apr; 64(4):721-33. McCulloch AD, Smaill BH, Hunter PJ. PMID: 2702734.
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Left ventricular epicardial deformation in isolated arrested dog heart. Am J Physiol. 1987 Jan; 252(1 Pt 2):H233-41. McCulloch AD, Smaill BH, Hunter PJ. PMID: 3812713.
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Model of the kinetics of ketone bodies in humans. Am J Physiol. 1982 Jul; 243(1):R7-17. Cobelli C, Nosadini R, Toffolo G, McCulloch A, Avogaro A, Tiengo A, Alberti KG. PMID: 7091397.
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