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Post-treatment SIV control is associated with specific features of viral persistence before and after treatment interruption. Nat Commun. 2026 Feb 27. Charre C, Melard A, Chaillon A, Gardiennet E, Desjardins D, Passaes C, Millet A, Fillion M, Dimant N, Monceaux V, Dereuddre-Bosquet N, Lambotte O, Muller-Trutwin M, Rouzioux C, Le Grand R, Saez-Cirion A, Avettand-Fenoel V. PMID: 41760627.
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Microglial reactivity and nodule formation are associated with Synaptodendritic damage in the brains of people with HIV-1. Brain Pathol. 2025 Dec 30; e70064. Dos Reis RS, Ignatz LA, Selvam S, Wagner MCE, Gianella S, Chaillon A, Gomez-Moreno V, Martison J, Rubin LH, Heberlen S, Stosor V, Lake J, Ayyavoo V. PMID: 41467330.
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Longitudinal T-Cell Phenotypic Dynamics During Sustained Antiretroviral Therapy in People With HIV. Open Forum Infect Dis. 2026 Jan; 13(1):ofaf775. Vanpouille C, Wells A, DeGruttola V, Lynch M, Zhang X, Tu XM, Chaillon A, Woodworth B, Gaitan N, Rawlings SA, Landay A, Weber KM, Scully EP, Karn J, Gianella S. PMID: 41536614; PMCID: PMC12798725.
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Case Series of Patients With Laboratory-Confirmed Marburg Virus Disease in 2023 in Equatorial Guinea. Clin Infect Dis. 2025 Dec 24; 81(5):891-899. Ondo Ndoho FA, Fontana L, Ondo Avomo CO, Mikue LEN, Fuga Eyemam DÑ, Nguere MA, Mometolo IE, Bibang Nzang RN, Nguema Maye DM, Hernandez Suarez Y, Esono SE, Miko Ayang JA, Giuliani R, Jacquerioz F, Lang HJ, Kojan R, Chaillon A, Ngai S, de Waroux OLP, Silenzi A, Di Marco M, Legand A, Formenty P, Negron ME, Klena JD, Choi MJ, Mayer O, Scholte FEM, Welch SR, Gutierrez EZ, Diaz J. PMID: 40274600.
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Relationship Between Opioid Use, Depression, and Quality of Life Among Persons With HIV at End of Life. J Acquir Immune Defic Syndr. 2025 Nov 01; 100(3):e8-e11. Higgins N, Patel N, Solso S, Dullano C, Riggs PK, Hastie E, Taylor J, Kaytes A, Deiss R, Smith D, Gianella S, Chaillon A, Dubé K. PMID: 40757930; PMCID: PMC12374249.
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HIV Reservoir Dynamics and Bacteriome Composition Along the Gut Axis. J Infect Dis. 2025 Oct 29. Trunfio M, Smith D, Gaitan N, Awad M, Porrachia M, Wells A, Rivera-Nieves J, Hastie E, Riggs P, Gianella S, Chaillon A. PMID: 41162327.
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Persistent type I interferon signaling within the brain of people with HIV on ART with cognitive impairment. PLoS Pathog. 2025 Aug; 21(8):e1013411. Tang Y, Xie L, Shabangu CS, Li D, da Silva Prates G, Manickam A, Wong LM, Chaillon A, Browne EP, Gianella S, Ho W, Margolis DM, Chen X, Hu W, Jiang G. PMID: 40833988; PMCID: PMC12367146.
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HIV Integration into the PTEN Gene and Its Tumor Microenvironment Implications for Lung Cancer. Curr Oncol. 2025 Jul 04; 32(7). Smith DM, Rowland EF, Gianella S, Patel SP, Solso S, Dullano C, Deiss R, Wells D, Ignacio C, Caballero G, Porrachia M, Kieffer C, Chaillon A. PMID: 40710199; PMCID: PMC12294024.
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Occupational Health Effects of Chlorine Spraying in Healthcare Workers: A Systematic Review and Meta-Analysis of Alternative Disinfectants and Application Methods. Int J Environ Res Public Health. 2025 Jun 16; 22(6). Fontana L, Stabile L, Caracci E, Chaillon A, Kothari KU, Buonanno G. PMID: 40566368; PMCID: PMC12192869.
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Chlorine gas and ultrafine particle emissions from bleach disinfection: exposure risk characterization. J Occup Med Toxicol. 2025 Jun 06; 20(1):18. Fontana L, Fappiano L, Stabile L, Chaillon A, Buonanno G. PMID: 40481594; PMCID: PMC12142923.
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Viral and Immune Risk Factors of HIV Rebound After Interruption of Antiretroviral Therapy. J Infect Dis. 2025 Jun 02; 231(5):1221-1229. Gianella S, Yu T, Wang R, Ignacio C, Schanz M, Kouyos RD, Caballero G, Gaitan NC, Rawlings S, Kuster H, Metzner KJ, Gandhi RT, Li JZ, Günthard HF, Smith DM, Chaillon A. PMID: 39661441; PMCID: PMC12128076.
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Phylodynamics for Human Immunodeficiency Virus Prevention: A Miami-Dade County Case Study. J Infect Dis. 2025 Mar 17; 231(3):643-652. Mehta SR, Wells AB, Cohen C, Campbell A, Truong M, Little SJ, Chaillon A. PMID: 39688386; PMCID: PMC12168071.
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Mpox: Characterization and clinical outcomes of patients in Colombian healthcare institutions. Glob Epidemiol. 2025 Jun; 9:100197. Álvarez-Moreno CA, Reveiz L, Aristizabal C, Quevedo J, Rubio MLM, Arévalo-Mora L, Villamil JFP, Padilla M, Alzate-Angel JC, Rylance J, Firdavs K, de la Hoz I, Valderrama-Beltran SL, Arboleda S, Sussmann O, Andrade J, Velásquez CM, García E, Galindo X, Martínez D, Arango L, Martínez E, Reyes-Caicedo K, Suarez MM, Ríos JG, Garay A, Pinzón W, Crispin AM, Chaillon A. PMID: 40242136; PMCID: PMC12002742.
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Predictors of Acute HCV Incidence in People with HIV: Insights from a Long-term Cohort Study. J Acquir Immune Defic Syndr. 2025 Mar 06. Chaillon A, Gaitan NC, Taylor LE, Wu K, Wansom T, Gianella S, Bosch RJ, Sherman KE. PMID: 40045466; PMCID: PMC12406231.
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Quantifying the impact of a large-scale opioid agonist treatment program on suicide prevention in New South Wales, Australia: A data-modeling study. Addiction. 2025 Aug; 120(8):1601-1609. Santo TJ, Chaillon A, Martin N, Hickman M, Jones N, Farrell M, Bharat C, Degenhardt L, Borquez A. PMID: 40000421; PMCID: PMC12215286.
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Filovirus outbreak responses and occupational health effects of chlorine spraying in healthcare workers: a systematic review and meta-analysis of alternative disinfectants and application methods. medRxiv. 2025 Feb 24. Fontana L, Stabile L, Caracci E, Chaillon A, Ait-Ikhlef K, Buonanno G. PMID: 39371180; PMCID: PMC11451664.
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Molecular HIV Surveillance: Beyond Cluster Detection and Response. AIDS Res Hum Retroviruses. 2025 Apr; 41(4):175-180. Mehta SR, Chaillon A, Wells AB, Little SJ. PMID: 39866042; PMCID: PMC12139703.
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Sexual Networks and Behavioral Characteristics of HIV-Positive Male Military Members, Female Sex Workers, and Male Civilians. AIDS Behav. 2025 Mar; 29(3):993-1003. Grillo MP, Saylors K, Tran BR, Brown N, Tripathi O, Killion J, Macera C, Faye B, Chisoko EC, Kabengele M, Mutombe AM, Djoko CF, Smith D, Chaillon A. PMID: 39806186; PMCID: PMC11830637.
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Anatomical, subset, and HIV-dependent expression of viral sensors and restriction factors. Cell Rep. 2025 01 28; 44(1):115202. George AF, Neidleman J, Luo X, Frouard J, Elphick N, Yin K, Young KC, Ma T, Andrew AK, Ezeonwumelu IJ, Pedersen JG, Chaillon A, Porrachia M, Woodworth B, Jakobsen MR, Thomas R, Smith DM, Gianella S, Roan NR. PMID: 39798087; PMCID: PMC11829653.
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Learning From Full Characterization of HIV Proviruses in People Receiving Long-Acting Cabotegravir/Rilpivirine With a History of Replication on the Antiretroviral Classes. Open Forum Infect Dis. 2025 Jan; 12(1):ofae748. Mchantaf G, Chaillon A, Charre C, Melard A, Gardiennet E, Guinard J, Prazuck T, Guillaume C, Mariaggi AA, Bois J, Hocqueloux L, Avettand-Fenoel V. PMID: 39872809; PMCID: PMC11770275.
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Brief Report: Genital Microbiome, Inflammation, and Tenofovir Levels in Transgender Men and Cisgender Women Taking Oral PrEP. J Acquir Immune Defic Syndr. 2024 12 15; 97(5):477-481. Hastie E, Srivatsa MS, Gianella S, Cottrell M, Forsyth K, Porrachia M, Burke L, Morris S, Rawlings SA, Karris M, Chaillon A, Blumenthal J. PMID: 39792141; PMCID: PMC11724185.
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Quality of Life in People With HIV at the End of Life: Preliminary Results From the Last Gift Observational Cohort Study. J Acquir Immune Defic Syndr. 2025 01 01; 98(1):82-89. Coler B, Honerkamp Smith G, Arora AK, Wells A, Solso S, Dullano C, Concha-Garcia S, Hill E, Riggs PK, Korolkova A, Deiss R, Smith D, Sundermann EE, Gianella S, Chaillon A, Dubé K. PMID: 39361015; PMCID: PMC11623374.
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Correction: Gene expression and chromatin conformation of microglia in virally suppressed people with HIV. Life Sci Alliance. 2025 Jan; 8(1). Schlachetzki JC, Gianella S, Ouyang Z, Lana AJ, Yang X, O'Brien S, Challacombe JF, Gaskill PJ, Jordan-Sciutto KL, Chaillon A, Moore D, Achim CL, Ellis RJ, Smith DM, Glass CK. PMID: 39467638; PMCID: PMC11519389.
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HIV persists in late coronary atheroma and is associated with increased local inflammation and disease progression. Res Sq. 2024 Oct 18. Obare LM, Bailin SS, Zhang X, Nthenge K, Priest S, Liu Q, Stolze LK, Sheng Q, Gangula R, Behrens M, Jenkins B, Prasad P, Neikirk K, Prakash P, Hogan M, Zhang L, Beasley HK, Shao J, Miller-Fleming TW, Actkins KV, Phillips MA, Hubert D, Malone J, Labeeb C, Gelbard A, Chaillon A, Mashayekhi M, Gabriel CL, Temu T, Olson L, Jones A, Beeri K, Baker P, Kawai K, Ghosh SKB, Guo L, Virmani R, Finn A, Shah P, Yang TS, Bick AG, Kirabo A, Su YR, Phillips EJ, Mallal S, Dash C, Koethe JR, Gianella S, McReynolds MR, Absi T, Hinton A, Wanjalla CN. PMID: 39483879; PMCID: PMC11527356.
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Cytokine trajectory over time in men and women with HIV on long-term antiretroviral therapy. AIDS. 2025 Jan 01; 39(1):1-10. Vanpouille C, Wells A, DeGruttola V, Lynch M, Zhang X, Fitzgerald W, Tu X, Chaillon A, Landay A, Weber K, Scully E, Karn J, Gianella S. PMID: 39639719; PMCID: PMC11631044.
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Cannabis Use and Cannabidiol Modulate HIV-Induced Alterations in TREM2 Expression: Implications for Age-Related Neuropathogenesis. Viruses. 2024 09 24; 16(10). Avalos B, Kulbe JR, Ford MK, Laird AE, Walter K, Mante M, Florio JB, Boustani A, Chaillon A, Schlachetzki JCM, Sundermann EE, Volsky DJ, Rissman RA, Ellis RJ, Letendre SL, Iudicello J, Fields JA. PMID: 39459844; PMCID: PMC11512329.
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WHO global research priorities for antimicrobial resistance in human health. Lancet Microbe. 2024 Nov; 5(11):100902. Bertagnolio S, Dobreva Z, Centner CM, Olaru ID, Donà D, Burzo S, Huttner BD, Chaillon A, Gebreselassie N, Wi T, Hasso-Agopsowicz M, Allegranzi B, Sati H, Ivanovska V, Kothari KU, Balkhy HH, Cassini A, Hamers RL, Weezenbeek KV, WHO Research Agenda for AMR in Human Health Collaborators. PMID: 39146948; PMCID: PMC11543637.
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Gene expression and chromatin conformation of microglia in virally suppressed people with HIV. Life Sci Alliance. 2024 Oct; 7(10). Schlachetzki JC, Gianella S, Ouyang Z, Lana AJ, Yang X, O'Brien S, Challacombe JF, Gaskill PJ, Jordan-Sciutto KL, Chaillon A, Moore D, Achim CL, Ellis RJ, Smith DM, Glass CK. PMID: 39060113; PMCID: PMC11282357.
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Case Series of Patients with Marburg Virus Disease, Equatorial Guinea, 2023. N Engl J Med. 2024 07 18; 391(3):283-285. Fontana L, Ondo Avomo CO, Ngomo Mikue LE, Fuga Eyemam DÑ, Nguere MA, Mometolo IE, Bibang Nzang RN, Nguema Maye DM, Giuliani R, Jacquerioz F, Lang HJ, Kojan R, Chaillon A, Ngai S, le Polain de Waroux O, Silenzi A, Di Marco M, Negrón ME, Klena JD, Choi MJ, Mayer O, Scholte FEM, Welch SR, Zielinski-Gutierrez E, Diaz J. PMID: 39018539; PMCID: PMC11976099.
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HIV-1 transmission dynamics among people who inject drugs on the US/Mexico border during the COVID-19 pandemic: a prosepective cohort study. Lancet Reg Health Am. 2024 May; 33:100751. Skaathun B, Strathdee SA, Shrader CH, Nacht CL, Borquez A, Artamonova I, Harvey-Vera A, Vera CF, Rangel G, Ignacio C, Woodworth B, Chaillon A, Vasylyeva TI. PMID: 38711788; PMCID: PMC11070707.
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Impact of influenza and pneumococcal vaccines on HIV persistence and immune dynamics during suppressive antiretroviral therapy. AIDS. 2024 07 01; 38(8):1131-1140. Gianella S, Anderson C, Chaillon A, Wells A, Porrachia M, Caballero G, Meneses M, Lonergan J, Woodworth B, Gaitan NC, Rawlings SA, Muttera L, Harkness L, Little SJ, May S, Smith D. PMID: 38526550; PMCID: PMC11141237.
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HIV-1 Remission after Allogeneic Hematopoietic-Cell Transplantation. N Engl J Med. 2024 02 15; 390(7):669-671. Dickter JK, Aribi A, Cardoso AA, Gianella S, Gendzekhadze K, Li S, Feng Y, Chaillon A, Laird GM, Browning DL, Ross JA, Nanayakkara DD, Puing A, Stan R, Lai LL, Chang S, Kidambi TD, Thomas S, Al Malki MM, Nakamura R, Alvarnas J, Taplitz RA, Dadwal SS, Forman SJ, Zaia JA. PMID: 38354149; PMCID: PMC10906479.
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Identification of system-level features in HIV migration within a host. PLoS One. 2023; 18(9):e0291367. Goyal R, De Gruttola V, Gianella S, Caballero G, Porrachia M, Ignacio C, Woodworth B, Smith DM, Chaillon A. PMID: 37751407; PMCID: PMC10521982.
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Reply. J Acquir Immune Defic Syndr. 2023 09 01; 94(1):e1-e2. Gaitan NC, Chaillon A. PMID: 37276185.
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Brief Report: Comparative Analysis of Pre-existing HIV Drug Resistance Mutations in Proviral DNA Using Next-Generation Sequencing and Routine HIV RNA Genotyping. J Acquir Immune Defic Syndr. 2023 07 01; 93(3):213-218. Gaitan NC, D'Antoni ML, Acosta RK, Gianella S, Little SJ, Chaillon A. PMID: 36961945; PMCID: PMC10272101.
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Brain microglia serve as a persistent HIV reservoir despite durable antiretroviral therapy. J Clin Invest. 2023 06 15; 133(12). Tang Y, Chaillon A, Gianella S, Wong LM, Li D, Simermeyer TL, Porrachia M, Ignacio C, Woodworth B, Zhong D, Du J, de la Parra Polina E, Kirchherr J, Allard B, Clohosey ML, Moeser M, Sondgeroth AL, Whitehill GD, Singh V, Dashti A, Smith DM, Eron JJ, Bar KJ, Chahroudi A, Joseph SB, Archin NM, Margolis DM, Jiang G. PMID: 37317962; PMCID: PMC10266791.
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Circulation of Human Immunodeficiency Virus 1 A6 Variant in the Eastern Border of the European Union-Dynamics of the Virus Transmissions Between Poland and Ukraine. Clin Infect Dis. 2023 05 24; 76(10):1716-1724. Serwin K, Chaillon A, Scheibe K, Urbanska A, Aksak-Was B, Zabek P, Siwak E, Cielniak I, Jablonowska E, Wójcik-Cichy K, Jakubowski P, Bociaga-Jasik M, Witor A, Szetela B, Parczewski M. PMID: 36857116.
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A Community-Driven Framework to Prioritize the Use of Donated Human Biological Materials in the Context of HIV Cure-Related Research at the End of Life. Pathog Immun. 2023; 8(1):1-16. Dubé K, Villa TJ, Taylor J, Kaytes A, Moore DJ, Little SJ, Chaillon A, Smith DM, Gianella S. PMID: 37252012; PMCID: PMC10225111.
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Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment. Open Forum Infect Dis. 2023 Apr; 10(4):ofad154. Carlin AF, Clark AE, Garretson AF, Bray W, Porrachia M, Santos AT, Rana TM, Chaillon A, Smith DM. PMID: 37096144; PMCID: PMC10122487.
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Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment. Clin Infect Dis. 2023 02 08; 76(3):e530-e532. Carlin AF, Clark AE, Chaillon A, Garretson AF, Bray W, Porrachia M, Santos AT, Rana TM, Smith DM. PMID: 35723411; PMCID: PMC9278181.
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Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border. Salud Publica Mex. 2023 Jan 02; 65(1, ene-feb):10-18. Chaillon A, Bojorquez I, Sepúlveda J, Harvey-Vera AY, Rangel MG, Skaathun B, Mehta SR, Ignacio C, Porrachia M, Smith DM, Strathdee SA. PMID: 36750073; PMCID: PMC10291843.
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Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program. Curr HIV/AIDS Rep. 2022 12; 19(6):566-579. Riggs PK, Chaillon A, Jiang G, Letendre SL, Tang Y, Taylor J, Kaytes A, Smith DM, Dubé K, Gianella S. PMID: 36260191; PMCID: PMC9580451.
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Landscape of Human Immunodeficiency Virus Neutralization Susceptibilities Across Tissue Reservoirs. Clin Infect Dis. 2022 10 12; 75(8):1342-1350. Wang C, Schlub TE, Yu WH, Tan CS, Stefic K, Gianella S, Smith DM, Lauffenburger DA, Chaillon A, Julg B. PMID: 35234862; PMCID: PMC9555844.
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Sex Differences in Human Immunodeficiency Virus Persistence and Reservoir Size During Aging. Clin Infect Dis. 2022 08 24; 75(1):73-80. Gianella S, Rawlings SA, Dobrowolski C, Nakazawa M, Chaillon A, Strain M, Layman L, Caballero G, Scully E, Scott B, Pacis C, Weber KM, Landay A, Anderson C, Karn J. PMID: 34612493; PMCID: PMC9402699.
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Network-level HIV risk norms are associated with individual-level HIV risk and harm reduction behaviors among people who inject drugs: a latent profile analysis. AIDS Behav. 2023 Feb; 27(2):484-495. Shrader CH, Borquez A, Vasylyeva TI, Chaillon A, Artamanova I, Harvey-Vera A, Vera CF, Rangel G, Strathdee SA, Skaathun B. PMID: 35939177; PMCID: PMC9358371.
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Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico. Viruses. 2022 07 08; 14(7). Mehta SR, Smith DM, Boukadida C, Chaillon A. PMID: 35891473; PMCID: PMC9317407.
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Phylodynamics of HIV in the Mexico City Metropolitan Region. J Virol. 2022 07 27; 96(14):e0070822. Avila-Rios S, García-Morales C, Reyes-Terán G, González-Rodríguez A, Matías-Florentino M, Mehta SR, Chaillon A. PMID: 35762759; PMCID: PMC9327710.
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Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016. PLoS One. 2022; 17(6):e0269973. Ding X, Chaillon A, Pan X, Zhang J, Zhong P, He L, Chen W, Fan Q, Jiang J, Luo M, Xia Y, Guo Z, Smith DM. PMID: 35709166; PMCID: PMC9202869.
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Virologic and Immunologic Characterization of COVID-19 Recrudescence after Nirmatrelvir/Ritonavir Treatment. Res Sq. 2022 May 18. Carlin AF, Clark AE, Chaillon A, Garretson AF, Bray W, Porrachi M, Santos AT, Smith DM. PMID: 35611335; PMCID: PMC9128786.
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SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual. Viruses. 2022 05 14; 14(5). Pusterla N, Chaillon A, Ignacio C, Smith DM, Barnum S, Lawton KOY, Smith G, Pickering B. PMID: 35632788; PMCID: PMC9145940.
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Genital Inflammation Is Not Associated With Decreased Vaginal Tenofovir Concentrations in Women Taking Oral PrEP. J Acquir Immune Defic Syndr. 2022 04 01; 89(4):390-395. Morris S, Cottrell M, Rawlings SA, Peterson S, Karris M, Pacheco D, Chaillon A, Kay A, Chow K, Anderson PL, Gianella S, Blumenthal J. PMID: 35202047; PMCID: PMC8887788.
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The impact of the COVID-19 pandemic among migrants in shelters in Tijuana, Baja California, Mexico. BMJ Glob Health. 2022 03; 7(3). Bojorquez-Chapela I, Strathdee SA, Garfein RS, Benson CA, Chaillon A, Ignacio C, Sepulveda J. PMID: 35277428; PMCID: PMC8919131.
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Phylogenetic Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) B.1.1.7 Lineage Suggest a Single Origin Followed by Multiple Exportation Events Versus Convergent Evolution. Clin Infect Dis. 2021 12 16; 73(12):2314-2317. Chaillon A, Smith DM. PMID: 33772259; PMCID: PMC8083653.
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Modeling the population-level impact of opioid agonist treatment on mortality among people accessing treatment between 2001 and 2020 in New South Wales, Australia. Addiction. 2022 05; 117(5):1338-1352. Chaillon A, Bharat C, Stone J, Jones N, Degenhardt L, Larney S, Farrell M, Vickerman P, Hickman M, Martin NK, Bórquez A. PMID: 34729841; PMCID: PMC9299987.
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Prevalence and correlates of SARS-CoV-2 seropositivity among people who inject drugs in the San Diego-Tijuana border region. PLoS One. 2021; 16(11):e0260286. Strathdee SA, Abramovitz D, Harvey-Vera A, Vera CF, Rangel G, Artamonova I, Chaillon A, Ignacio C, Calderon A, Martin NK, Patterson TL. PMID: 34807963; PMCID: PMC8608290.
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Cost-effectiveness of Antenatal Rescreening Among Pregnant Women for Hepatitis C in the United States. Clin Infect Dis. 2021 11 02; 73(9):e3355-e3357. Chaillon A, Wynn A, Kushner T, Reau N, Martin NK. PMID: 32282879; PMCID: PMC8563211.
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Dynamics and Dispersal of Local Human Immunodeficiency Virus Epidemics Within San Diego and Across the San Diego-Tijuana Border. Clin Infect Dis. 2021 10 05; 73(7):e2018-e2025. Vrancken B, Mehta SR, Ávila-Ríos S, García-Morales C, Tapia-Trejo D, Reyes-Terán G, Navarro-Álvarez S, Little SJ, Hoenigl M, Pines HA, Patterson T, Strathdee SA, Smith DM, Dellicour S, Chaillon A. PMID: 33079188; PMCID: PMC8492140.
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The Role of Phylogenetics in Unravelling Patterns of HIV Transmission towards Epidemic Control: The Quebec Experience (2002-2020). Viruses. 2021 08 19; 13(8). Brenner BG, Ibanescu RI, Osman N, Cuadra-Foy E, Oliveira M, Chaillon A, Stephens D, Hardy I, Routy JP, Thomas R, Baril JG, Leblanc R, Tremblay C, Roger M. PMID: 34452506; PMCID: PMC8402830.
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Scale up rapid research autopsies for tissue immunology. Nature. 2021 07; 595(7867):352. Rawlings SA, Chaillon A, Smith D, Gianella S. PMID: 34257439; PMCID: PMC11140983.
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Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City. PLoS Pathog. 2021 05; 17(5):e1009571. Dellicour S, Hong SL, Vrancken B, Chaillon A, Gill MS, Maurano MT, Ramaswami S, Zappile P, Marier C, Harkins GW, Baele G, Duerr R, Heguy A. PMID: 34015049; PMCID: PMC8136714.
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Can't Work From Home: Pooled Nucleic Acid Testing of Laboratory Workers During the COVID-19 Pandemic. Open Forum Infect Dis. 2021 Jul; 8(7):ofab129. Rawlings SA, Scott B, Layman L, Naranatt P, Heltsley R, Ignacio C, Porrachia M, Gianella S, Smith D, Chaillon A. PMID: 34327248; PMCID: PMC7989168.
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HIV transmission network analysis allows identifying unreported risk factors in HIV-positive blood donors in France. Transfusion. 2021 04; 61(4):1191-1201. Cappy P, Chaillon A, Pillonel J, Essat A, Chaix ML, Meyer L, Barin F, Tiberghien P, Laperche S. PMID: 33592129.
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Cost and cost-effectiveness of a real-world HCV treatment program among HIV-infected individuals in Myanmar. BMJ Glob Health. 2021 02; 6(2). Marquez LK, Chaillon A, Soe KP, Johnson DC, Zosso JM, Incerti A, Loarec A, Nguyen A, Walker JG, Mafirakureva N, Lo Re Iii V, Wynn A, McIntosh C, Kiene SM, Brodine S, Garfein RS, Vickerman P, Martin NK. PMID: 33627360; PMCID: PMC7908309.
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High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. J Acquir Immune Defic Syndr. 2020 12 01; 85(4):416-422. Jean Louis F, Domercant JW, Ignacio C, Gianella S, Galbaud G, Leonard M, Smith DM, Chaillon A. PMID: 33136738; PMCID: PMC7592887.
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Comparative Circulation Dynamics of the Five Main HIV Types in China. J Virol. 2020 11 09; 94(23). Vrancken B, Zhao B, Li X, Han X, Liu H, Zhao J, Zhong P, Lin Y, Zai J, Liu M, Smith DM, Dellicour S, Chaillon A. PMID: 32938762; PMCID: PMC7654276.
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Drug Resistance Spread in 6 Metropolitan Regions, Germany, 2001-20181. Emerg Infect Dis. 2020 10; 26(10):2439-2443. Stecher M, Chaillon A, Stephan C, Knops E, Kohmer N, Lehmann C, Eberle J, Bogner J, Spinner CD, Eis-Hübinger AM, Wasmuth JC, Schäfer G, Behrens G, Mehta SR, Vehreschild JJ, Hoenigl M. PMID: 32946725; PMCID: PMC7510719.
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Subclinical Cytomegalovirus and Epstein-Barr Virus Shedding Is Associated with Increasing HIV DNA Molecular Diversity in Peripheral Blood during Suppressive Antiretroviral Therapy. J Virol. 2020 09 15; 94(19). Chaillon A, Nakazawa M, Rawlings SA, Curtin G, Caballero G, Scott B, Anderson C, Gianella S. PMID: 32641485; PMCID: PMC7495390.
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What is required for achieving hepatitis C virus elimination in Singapore? A modeling study. J Gastroenterol Hepatol. 2021 Apr; 36(4):1110-1117. Chaillon A, Thurairajah PH, Hsiang JC, Martin NK. PMID: 32777859; PMCID: PMC8174139.
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No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. Open Forum Infect Dis. 2020 Aug; 7(8):ofaa325. Rawlings SA, Ignacio C, Porrachia M, Du P, Smith DM, Chaillon A. PMID: 32875005; PMCID: PMC7452368.
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HIV RNA Rebound in Seminal Plasma after Antiretroviral Treatment Interruption. J Virol. 2020 07 16; 94(15). Gianella S, Chaillon A, Chun TW, Sneller MC, Ignacio C, Vargas-Meneses MV, Caballero G, Ellis RJ, Kovacs C, Benko E, Huibner S, Kaul R. PMID: 32434884; PMCID: PMC7375368.
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HIV persists throughout deep tissues with repopulation from multiple anatomical sources. J Clin Invest. 2020 04 01; 130(4):1699-1712. Chaillon A, Gianella S, Dellicour S, Rawlings SA, Schlub TE, De Oliveira MF, Ignacio C, Porrachia M, Vrancken B, Smith DM. PMID: 31910162; PMCID: PMC7108926.
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Tracing the transmission dynamics of HIV-1 CRF55_01B. Sci Rep. 2020 03 20; 10(1):5098. Zai J, Liu H, Lu Z, Chaillon A, Smith D, Li Y, Li X. PMID: 32198405; PMCID: PMC7083841.
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Evolutionary history, potential intermediate animal host, and cross-species analyses of SARS-CoV-2. J Med Virol. 2020 06; 92(6):602-611. Li X, Zai J, Zhao Q, Nie Q, Li Y, Foley BT, Chaillon A. PMID: 32104911; PMCID: PMC7228310.
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Pretreatment HIV drug resistance spread within transmission clusters in Mexico City. J Antimicrob Chemother. 2020 03 01; 75(3):656-667. Matías-Florentino M, Chaillon A, Ávila-Ríos S, Mehta SR, Paz-Juárez HE, Becerril-Rodríguez MA, Del Arenal-Sánchez SJ, Piñeirúa-Menéndez A, Ruiz V, Iracheta-Hernández P, Macías-González I, Tena-Sánchez J, Badial-Hernández F, González-Rodríguez A, Reyes-Terán G. PMID: 31819984; PMCID: PMC7021100.
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Transmission dynamics and evolutionary history of 2019-nCoV. J Med Virol. 2020 05; 92(5):501-511. Li X, Wang W, Zhao X, Zai J, Zhao Q, Li Y, Chaillon A. PMID: 32027035; PMCID: PMC7166881.
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Genetic Network Analysis to Assess the Risk of Human Immunodeficiency Virus Transmission Among Men Who Have Sex With Men Seeking Partners on the Internet. Clin Infect Dis. 2020 02 14; 70(5):925-932. Martin TCS, Chaillon A, Graves SK, Lin T, Gianella S, Smith DM, Little SJ, Hoenigl M. PMID: 30953067; PMCID: PMC7319271.
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Optimizing Screening for HIV. Open Forum Infect Dis. 2020 Feb; 7(2):ofaa024. Chaillon A, Hoenigl M, Freitas L, Feldman H, Tilghman W, Wang L, Smith D, Little S, Mehta SR. PMID: 32055638; PMCID: PMC7009491.
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Effect of Cannabis Use on Human Immunodeficiency Virus DNA During Suppressive Antiretroviral Therapy. Clin Infect Dis. 2020 01 01; 70(1):140-143. Chaillon A, Nakazawa M, Anderson C, Christensen-Quick A, Ellis RJ, Franklin D, Morris SR, Gianella S. PMID: 31074488; PMCID: PMC6912153.
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Antiretroviral Treatment Simplification With 2-Drug Regimens: Impact of Transmitted Drug Resistance Mutations. Open Forum Infect Dis. 2020 Jan; 7(1):ofz535. Kessler HH, Stelzl E, Blažic A, Mehta SR, Benezeder AS, Genger-Hackl C, Santner BI, Chaillon A, Hoenigl M. PMID: 31915716; PMCID: PMC6942491.
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Cost-effectiveness of Universal Hepatitis C Virus Screening of Pregnant Women in the United States. Clin Infect Dis. 2019 11 13; 69(11):1888-1895. Chaillon A, Rand EB, Reau N, Martin NK. PMID: 30689769; PMCID: PMC7188080.
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Proliferative memory SAMHD1low CD4+ T cells harbour high levels of HIV-1 with compartmentalized viral populations. PLoS Pathog. 2019 06; 15(6):e1007868. Hani L, Chaillon A, Nere ML, Ruffin N, Alameddine J, Salmona M, Lopez Zaragoza JL, Smith DM, Schwartz O, Lelièvre JD, Delaugerre C, Lévy Y, Seddiki N. PMID: 31220191; PMCID: PMC6605680.
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Cost-effectiveness and budgetary impact of HCV treatment with direct-acting antivirals in India including the risk of reinfection. PLoS One. 2019; 14(6):e0217964. Chaillon A, Mehta SR, Hoenigl M, Solomon SS, Vickerman P, Hickman M, Skaathun B, Martin NK. PMID: 31170246; PMCID: PMC6553784.
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Hotspots of Transmission Driving the Local Human Immunodeficiency Virus Epidemic in the Cologne-Bonn Region, Germany. Clin Infect Dis. 2019 04 24; 68(9):1539-1546. Stecher M, Hoenigl M, Eis-Hübinger AM, Lehmann C, Fätkenheuer G, Wasmuth JC, Knops E, Vehreschild JJ, Mehta S, Chaillon A. PMID: 30169606; PMCID: PMC6481988.
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Primary Incidence of Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men in San Diego, 2000-2015. Open Forum Infect Dis. 2019 Apr; 6(4):ofz160. Chaillon A, Sun X, Cachay ER, Looney D, Wyles D, Garfein RS, Martin TCS, Jain S, Mehta SR, Smith DM, Little SJ, Martin NK. PMID: 31041355; PMCID: PMC6483132.
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HIV-1 drug resistance before initiation or re-initiation of first-line ART in eight regions of Mexico: a sub-nationally representative survey. J Antimicrob Chemother. 2019 04 01; 74(4):1044-1055. Ávila-Ríos S, García-Morales C, Valenzuela-Lara M, Chaillon A, Tapia-Trejo D, Pérez-García M, López-Sánchez DM, Maza-Sánchez L, Del Arenal-Sánchez SJ, Paz-Juárez HE, Quiroz-Morales VS, Mehta SR, Smith DM, León-Juárez EA, Magis-Rodríguez C, Reyes-Terán G, HIVDR MexNet Group. PMID: 30597094; PMCID: PMC7939069.
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In-depth Sampling of High-risk Populations to Characterize HIV Transmission Epidemics Among Young MSM Using PrEP in France and Quebec. Open Forum Infect Dis. 2019 Mar; 6(3):ofz080. Chaillon A, Delaugerre C, Brenner B, Armero A, Capitant C, Nere ML, Leturque N, Pialoux G, Cua E, Tremblay C, Smith DM, Goujard C, Meyer L, Molina JM, Chaix ML. PMID: 30899768; PMCID: PMC6422434.
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Viral rebound in semen after antiretroviral treatment interruption in an HIV therapeutic vaccine double-blind trial. AIDS. 2019 02 01; 33(2):279-284. Palich R, Ghosn J, Chaillon A, Boilet V, Nere ML, Chaix ML, Delobel P, Molina JM, Lucht F, Bouchaud O, Rieux V, Thiebaut R, Levy Y, Delaugerre C, Lelievre JD, VRI02/ANRS149 LIGHT Vaccine Trial Group. PMID: 30325777.
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Reconstitution of HIV-1 reservoir following high-dose chemotherapy/autologous stem cell transplantation for lymphoma. AIDS. 2019 02 01; 33(2):247-257. Delagreverie HM, Gerard L, Chaillon A, Roelens M, Djerroudi L, Salmona M, Larghero J, Galicier L, Simon F, Oksenhendler E, Moins-Teisserenc H, Delaugerre C. PMID: 30325771.
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Challenges in Quantifying Cytosine Methylation in the HIV Provirus. mBio. 2019 01 22; 10(1). LaMere SA, Chaillon A, Huynh C, Smith DM, Gianella S. PMID: 30670613; PMCID: PMC6343035.
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A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela. PLoS Negl Trop Dis. 2018 12; 12(12):e0007053. Carlin AF, Wen J, Vizcarra EA, McCauley M, Chaillon A, Akrami K, Kim C, Ngono AE, Lara-Marquez ML, Smith DM, Glass CK, Schooley RT, Benner C, Shresta S. PMID: 30596671; PMCID: PMC6329527.
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Influenza Vaccination Can Broadly Activate the HIV Reservoir During Antiretroviral Therapy. J Acquir Immune Defic Syndr. 2018 11 01; 79(3):e104-e107. Christensen-Quick A, Chaillon A, Yek C, Zanini F, Jordan P, Ignacio C, Caballero G, Gianella S, Smith D. PMID: 30085954; PMCID: PMC6185804.
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Pretreatment human immunodeficiency virus type 1 (HIV-1) drug resistance in transmission clusters of the Cologne-Bonn region, Germany. Clin Microbiol Infect. 2019 Feb; 25(2):253.e1-253.e4. Stecher M, Chaillon A, Eis-Hübinger AM, Lehmann C, Fätkenheuer G, Wasmuth JC, Knops E, Vehreschild JJ, Mehta S, Hoenigl M. PMID: 30315957; PMCID: PMC6349503.
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Transient and asymptomatic meningitis in human immunodeficiency virus-1 subtype C: a case study of genetic compartmentalization and biomarker dynamics. J Neurovirol. 2018 12; 24(6):786-796. de Almeida SM, Oliveira MF, Chaillon A, Rotta I, Ribeiro CE, de Pereira AP, Smith D, Letendre S, Ellis RJ. PMID: 30194587; PMCID: PMC6279585.
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Molecular Epidemiology of the HIV Epidemic in Three German Metropolitan Regions - Cologne/Bonn, Munich and Hannover, 1999-2016. Sci Rep. 2018 05 01; 8(1):6799. Stecher M, Chaillon A, Eberle J, Behrens GMN, Eis-Hübinger AM, Lehmann C, Jablonka A, Bogner J, Fätkenheuer G, Spinner CD, Wasmuth JC, Kaiser R, Mehta SR, Vehreschild JJ, Hoenigl M. PMID: 29717148; PMCID: PMC5931588.
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Impact of Public Safety Policies on Human Immunodeficiency Virus Transmission Dynamics in Tijuana, Mexico. Clin Infect Dis. 2018 02 10; 66(5):758-764. Mehta SR, Chaillon A, Gaines TL, Gonzalez-Zuniga PE, Stockman JK, Almanza-Reyes H, Chavez JR, Vera A, Wagner KD, Patterson TL, Scott B, Smith DM, Strathdee SA. PMID: 29045592; PMCID: PMC5848227.
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Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. J Virol. 2018 02 01; 92(3). Chaillon A, Gianella S, Lada SM, Perez-Santiago J, Jordan P, Ignacio C, Karris M, Richman DD, Mehta SR, Little SJ, Wertheim JO, Smith DM. PMID: 29142136; PMCID: PMC5774877.
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No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. J Virol. 2017 11 01; 91(21). Chaillon A, Nakazawa M, Wertheim JO, Little SJ, Smith DM, Mehta SR, Gianella S. PMID: 28794047; PMCID: PMC5640831.
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Effect of cytomegalovirus and Epstein-Barr virus replication on intestinal mucosal gene expression and microbiome composition of HIV-infected and uninfected individuals. AIDS. 2017 09 24; 31(15):2059-2067. Gianella S, Chaillon A, Mutlu EA, Engen PA, Voigt RM, Keshavarzian A, Losurdo J, Chakradeo P, Lada SM, Nakazawa M, Landay AL. PMID: 28906277; PMCID: PMC5654609.
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Probing the compartmentalization of HIV-1 in the central nervous system through its neutralization properties. PLoS One. 2017; 12(8):e0181680. Stefic K, Chaillon A, Bouvin-Pley M, Moreau A, Braibant M, Bastides F, Gras G, Bernard L, Barin F. PMID: 28841647; PMCID: PMC5571919.
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Identification of major routes of HIV transmission throughout Mesoamerica. Infect Genet Evol. 2017 10; 54:98-107. Chaillon A, Avila-Ríos S, Wertheim JO, Dennis A, García-Morales C, Tapia-Trejo D, Mejía-Villatoro C, Pascale JM, Porras-Cortés G, Quant-Durán CJ, Lorenzana I, Meza RI, Palou EY, Manzanero M, Cedillos RA, Reyes-Terán G, Mehta SR, Mesoamerican Project Group. PMID: 28645708; PMCID: PMC5610625.
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Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study. J Neurovirol. 2017 06; 23(3):460-473. de Almeida SM, Rotta I, Ribeiro CE, Oliveira MF, Chaillon A, de Pereira AP, Cunha AP, Zonta M, Bents JF, Raboni SM, Smith D, Letendre S, Ellis RJ. PMID: 28247269; PMCID: PMC5441962.
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Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. Retrovirology. 2017 Feb 21; 14(1):15. Chaillon A, Essat A, Frange P, Smith DM, Delaugerre C, Barin F, Ghosn J, Pialoux G, Robineau O, Rouzioux C, Goujard C, Meyer L, Chaix ML, on behalf the ANRS PRIMO Cohort Study. PMID: 28222757; PMCID: PMC5322782.
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HIV surveillance combining an assay for identification of very recent infection and phylogenetic analyses on dried spots. AIDS. 2017 01 28; 31(3):407-416. Brand D, Capsec J, Chaillon A, Cazein F, Le Vu S, Moreau A, Pillonel J, Brunet S, Thierry D, Guillon-Grammatico L, Lot F, Barin F. PMID: 27831948.
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Partner services in adults with acute and early HIV infection. AIDS. 2017 01 14; 31(2):287-293. Green N, Hoenigl M, Chaillon A, Anderson CM, Kosakovsky Pond SL, Smith DM, Little SJ. PMID: 27831950; PMCID: PMC5177524.
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Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations. PLoS Pathog. 2017 01; 13(1):e1006112. Oliveira MF, Chaillon A, Nakazawa M, Vargas M, Letendre SL, Strain MC, Ellis RJ, Morris S, Little SJ, Smith DM, Gianella S. PMID: 28046096; PMCID: PMC5266327.
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HIV Trafficking Between Blood and Semen During Early Untreated HIV Infection. J Acquir Immune Defic Syndr. 2017 01 01; 74(1):95-102. Chaillon A, Smith DM, Vanpouille C, Lisco A, Jordan P, Caballero G, Vargas M, Gianella S, Mehta SR. PMID: 27548440; PMCID: PMC5140710.
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HIV-associated neurocognitive disorder is associated with HIV-1 dual infection. AIDS. 2016 11 13; 30(17):2591-2597. Wagner GA, Chaillon A, Liu S, Franklin DR, Caballero G, Kosakovsky Pond SL, Vaida F, Heaton RK, Letendre SL, Grant I, Richman DD, Smith DM. PMID: 27536983; PMCID: PMC5083206.
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Rapid HIV Viral Load Suppression in those Initiating Antiretroviral Therapy at First Visit after HIV Diagnosis. Sci Rep. 2016 09 06; 6:32947. Hoenigl M, Chaillon A, Moore DJ, Morris SR, Mehta SR, Gianella S, Amico KR, Little SJ. PMID: 27597312; PMCID: PMC5011704.
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Screening for acute HIV infection in community-based settings: Cost-effectiveness and impact on transmissions. J Infect. 2016 11; 73(5):476-484. Hoenigl M, Chaillon A, Mehta SR, Smith DM, Graff-Zivin J, Little SJ. PMID: 27521468; PMCID: PMC5143169.
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The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China. Sci Rep. 2016 06 29; 6:28703. Zhao J, Chen L, Chaillon A, Zheng C, Cai W, Yang Z, Li G, Gan Y, Wang X, Hu Y, Zhong P, Zhang C, Smith DM. PMID: 27352965; PMCID: PMC4926087.
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A practical online tool to estimate antiretroviral coverage for HIV infected and susceptible populations needed to reduce local HIV epidemics. Sci Rep. 2016 06 24; 6:28707. Chaillon A, Hoenigl M, Mehta SR, Weibel N, Little SJ, Smith DM. PMID: 27337983; PMCID: PMC4919622.
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Characterizing the multiplicity of HIV founder variants during sexual transmission among MSM. Virus Evol. 2016 Jan; 2(1):vew012. Chaillon A, Gianella S, Little SJ, Caballero G, Barin F, Kosakovsky Pond S, Richman DD, Smith DM, Mehta SR. PMID: 30186625; PMCID: PMC6118227.
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HIV Infection Rates and Risk Behavior among Young Men undergoing community-based Testing in San Diego. Sci Rep. 2016 05 16; 6:25927. Hoenigl M, Chaillon A, Morris SR, Little SJ. PMID: 27181715; PMCID: PMC4867437.
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CD4/CD8 Cell Ratio in Acute HIV Infection and the Impact of Early Antiretroviral Therapy. Clin Infect Dis. 2016 08 01; 63(3):425-6. Hoenigl M, Chaillon A, Little SJ. PMID: 27143670; PMCID: PMC4946020.
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Clear Links Between Starting Methamphetamine and Increasing Sexual Risk Behavior: A Cohort Study Among Men Who Have Sex With Men. J Acquir Immune Defic Syndr. 2016 Apr 15; 71(5):551-7. Hoenigl M, Chaillon A, Moore DJ, Morris SR, Smith DM, Little SJ. PMID: 26536321; PMCID: PMC4788567.
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Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals. J Med Virol. 2016 10; 88(10):1832-5. Chin BS, Chaillon A, Mehta SR, Wertheim JO, Kim G, Shin HS, Smith DM. PMID: 26990771; PMCID: PMC4969179.
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Characterization of HIV Transmission in South-East Austria. PLoS One. 2016; 11(3):e0151478. Hoenigl M, Chaillon A, Kessler HH, Haas B, Stelzl E, Weninger K, Little SJ, Mehta SR. PMID: 26967154; PMCID: PMC4788428.
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HIV migration between blood plasma and cellular subsets before and after HIV therapy. J Med Virol. 2016 Apr; 88(4):606-13. Choi JY, Chaillon A, Oh JO, Ahn JY, Ann HW, Jung IY, Ahn MY, Jeon YD, Ku NS, Smith DM, Kim JM. PMID: 26348372; PMCID: PMC4731240.
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HIV Transmission Networks in the San Diego-Tijuana Border Region. EBioMedicine. 2015 Oct; 2(10):1456-63. Mehta SR, Wertheim JO, Brouwer KC, Wagner KD, Chaillon A, Strathdee S, Patterson TL, Rangel MG, Vargas M, Murrell B, Garfein R, Little SJ, Smith DM. PMID: 26629540; PMCID: PMC4634195.
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Estimating the timing of mother-to-child transmission of the human immunodeficiency virus type 1 using a viral molecular evolution model. PLoS One. 2014; 9(4):e90421. Chaillon A, Samleerat T, Zoveda F, Ballesteros S, Moreau A, Ngo-Giang-Huong N, Jourdain G, Gianella S, Lallemant M, Depaulis F, Barin F. PMID: 24717647; PMCID: PMC3981669.
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A case cluster demonstrating the relationship between HLA concordance and virologic and disease outcomes in human immunodeficiency virus infection. Virology. 2014 Jan 20; 449:104-8. Chaillon A, Gianella S, Massanella Luna M, Little SJ, Richman DD, Mehta SR. PMID: 24418543; PMCID: PMC3895440.
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Novel codon insert in HIV type 1 clade B reverse transcriptase associated with low-level viremia during antiretroviral therapy. AIDS Res Hum Retroviruses. 2014 Feb; 30(2):165-9. Chaillon A, Gianella S, Vazquez H, Ignacio C, Zweig AC, Richman DD, Smith DM. PMID: 24020934; PMCID: PMC3910474.
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Dynamics of viral evolution and neutralizing antibody response after HIV-1 superinfection. J Virol. 2013 Dec; 87(23):12737-44. Chaillon A, Wagner GA, Hepler NL, Little SJ, Kosakovsky Pond SL, Caballero G, Pacold ME, Phung P, Wrin T, Richman DD, Wertheim JO, Smith DM. PMID: 24049166; PMCID: PMC3838120.
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HIV-DNA in the genital tract of women on long-term effective therapy is associated to residual viremia and previous AIDS-defining illnesses. PLoS One. 2013; 8(8):e69686. Prazuck T, Chaillon A, Avettand-Fènoël V, Caplan AL, Sayang C, Guigon A, Niang M, Barin F, Rouzioux C, Hocqueloux L. PMID: 23990886; PMCID: PMC3749193.
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National sentinel surveillance of transmitted drug resistance in antiretroviral-naive chronically HIV-infected patients in France over a decade: 2001-2011. J Antimicrob Chemother. 2013 Nov; 68(11):2626-31. Descamps D, Assoumou L, Chaix ML, Chaillon A, Pakianather S, de Rougemont A, Storto A, Dos Santos G, Krivine A, Delaugerre C, Montes B, Izopet J, Charpentier C, Wirden M, Maillard A, Morand-Joubert L, Pallier C, Plantier JC, Guinard J, Tamalet C, Cottalorda J, Marcelin AG, Desbois D, Henquell C, Calvez V, Brun-Vézinet F, Masquelier B, Costagliola D, ANRS AC11 Resistance Study Group. PMID: 23798669.
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[Atrial chaotic tachycardia during a respiratory tract infection due to NL63 coronavirus]. Arch Pediatr. 2013 Mar; 20(3):278-81. Chantreuil J, Favrais G, Soule N, Maakaroun-Vermesse Z, Chaillon A, Chantepie A, Saliba E. PMID: 23394725; PMCID: PMC7126283.
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Human immunodeficiency virus type-1 (HIV-1) continues to evolve in presence of broadly neutralizing antibodies more than ten years after infection. PLoS One. 2012; 7(8):e44163. Chaillon A, Braibant M, Hué S, Bencharif S, Enard D, Moreau A, Samri A, Agut H, Barin F. PMID: 22957000; PMCID: PMC3431314.
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The breadth and titer of maternal HIV-1-specific heterologous neutralizing antibodies are not associated with a lower rate of mother-to-child transmission of HIV-1. J Virol. 2012 Oct; 86(19):10540-6. Chaillon A, Wack T, Braibant M, Mandelbrot L, Blanche S, Warszawski J, Barin F. PMID: 22811522; PMCID: PMC3457297.
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Decreased specificity of an assay for recent infection in HIV-1-infected patients on highly active antiretroviral treatment: implications for incidence estimates. Clin Vaccine Immunol. 2012 Aug; 19(8):1248-53. Chaillon A, Le Vu S, Brunet S, Gras G, Bastides F, Bernard L, Meyer L, Barin F. PMID: 22718132; PMCID: PMC3416072.
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Naturally occurring substitutions of conserved residues in human immunodeficiency virus type 1 variants of different clades are involved in PG9 and PG16 resistance to neutralization. J Gen Virol. 2012 Jul; 93(Pt 7):1495-1505. Thenin S, Roch E, Samleerat T, Moreau T, Chaillon A, Moreau A, Barin F, Braibant M. PMID: 22492917.
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Case report: benefits of quantitative polymerase chain reaction in the clinical management of herpes simplex virus 1 infection with prominent hepatitis and unusual secondary progression. J Med Virol. 2012 Mar; 84(3):457-61. Chaillon A, Schnepf N, Jonas M, Mondon K, Orain I, Lioger B, Cottier JP, Hommet C, Goudeau A. PMID: 22246832.
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High burden of non-influenza viruses in influenza-like illness in the early weeks of H1N1v epidemic in France. PLoS One. 2011; 6(8):e23514. Schnepf N, Resche-Rigon M, Chaillon A, Scemla A, Gras G, Semoun O, Taboulet P, Molina JM, Simon F, Goudeau A, LeGoff J. PMID: 21858150; PMCID: PMC3157400.
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Sustained virologic response with ribavirin in chronic hepatitis E virus infection in heart transplantation. J Heart Lung Transplant. 2011 Jul; 30(7):841-3. Chaillon A, Sirinelli A, De Muret A, Nicand E, d'Alteroche L, Goudeau A. PMID: 21515077.
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[Neutralizing antibodies and human immunodeficiency virus type 1 (HIV-1) infection]. Virologie (Montrouge). 2011 Feb 01; 15(1):23-35. Braibant M, Chaillon A, Barin F. PMID: 36151647.
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The V1V2 domain and an N-linked glycosylation site in the V3 loop of the HIV-1 envelope glycoprotein modulate neutralization sensitivity to the human broadly neutralizing antibody 2G12. J Virol. 2011 Apr; 85(7):3642-8. Chaillon A, Braibant M, Moreau T, Thenin S, Moreau A, Autran B, Barin F. PMID: 21248038; PMCID: PMC3067857.
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Campylobacter fetus subspecies fetus spondylodiscitis. J Med Microbiol. 2010 Dec; 59(Pt 12):1505-1508. Chaillon A, Baty G, Lauvin MA, Besnier JM, Goudeau A, Lanotte P. PMID: 20705728.
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[Epidemiological aspects of human Q fever in Indre-et-Loire between 2003 and 2005 and comparison with caprine Q fever]. Med Mal Infect. 2008 Apr; 38(4):215-24. Chaillon A, Bind JL, Delaval J, Haguenoer K, Besnier JM, Choutet P. PMID: 18395376.
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[Pathology of inoculation]. Rev Prat. 2008 Jan 31; 58(2):213-21. Chaillon A, Besnier JM, Choutet P. PMID: 18361288.
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