Bioconductor - affycoretools
Bioconductor 3.22
Software Packages
affycoretools
affycoretools
This is the
released
version of affycoretools; for the devel version, see
affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
DOI:
10.18129/B9.bioc.affycoretools
Bioconductor version:
Release (3.22)
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
Author:
James W. MacDonald
Maintainer:
James W. MacDonald
Citation (from within R, enter
citation("affycoretools")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affycoretools")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affycoretools")
Creating annotated output with \Biocpkg{affycoretools} and ReportingTools
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
GeneExpression
Microarray
OneChannel
ReportWriting
Software
Version
1.82.0
In Bioconductor since
BioC 1.8 (R-2.3) (20 years)
License
Artistic-2.0
Depends
Biobase
, methods
Imports
affy
limma
GOstats
gcrma
, splines,
xtable
AnnotationDbi
ggplot2
gplots
oligoClasses
ReportingTools
hwriter
lattice
S4Vectors
edgeR
RSQLite
BiocGenerics
DBI
Glimma
System Requirements
URL
See More
Suggests
affydata
hgfocuscdf
BiocStyle
knitr
hgu95av2.db
rgl
rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
EnMCB
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
affycoretools_1.82.0.tar.gz
Windows Binary (x86_64)
affycoretools_1.82.0.zip
macOS Binary (x86_64)
affycoretools_1.82.0.tgz
macOS Binary (arm64)
affycoretools_1.82.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/affycoretools
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/affycoretools
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