Bioconductor - breakpointR
Bioconductor 3.22
Software Packages
breakpointR
breakpointR
This is the
released
version of breakpointR; for the devel version, see
breakpointR
Find breakpoints in Strand-seq data
DOI:
10.18129/B9.bioc.breakpointR
Bioconductor version:
Release (3.22)
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Author:
David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer:
David Porubsky
Citation (from within R, enter
citation("breakpointR")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("breakpointR")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("breakpointR")
How to use breakpointR
PDF
R Script
Reference Manual
PDF
NEWS
Text
LICENSE
Text
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Details
biocViews
Coverage
DNASeq
Sequencing
SingleCell
Software
Version
1.28.0
In Bioconductor since
BioC 3.8 (R-3.5) (7.5 years)
License
file
LICENSE
Depends
R (>= 3.5),
GenomicRanges
cowplot
breakpointRdata
Imports
methods, utils, grDevices, stats,
S4Vectors
GenomeInfoDb
(>= 1.12.3),
IRanges
Rsamtools
GenomicAlignments
ggplot2
BiocGenerics
gtools
doParallel
foreach
System Requirements
URL
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knitr
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testthat
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Build Report
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Installation
instructions to use this package in your R session.
Source Package
breakpointR_1.28.0.tar.gz
Windows Binary (x86_64)
breakpointR_1.28.0.zip
macOS Binary (x86_64)
breakpointR_1.28.0.tgz
macOS Binary (arm64)
breakpointR_1.28.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/breakpointR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/breakpointR
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