Bioconductor - Category

This is the released version of Category; for the devel version, see Category.

Category Analysis

Bioconductor version: Release (3.22)

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Category")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	2.76.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21 years)
License	Artistic-2.0
Depends	methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports	utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
System Requirements
URL

Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
Linking To
Enhances
Depends On Me	GOstats
Imports Me	categoryCompare, GmicR, interactiveDisplay, meshr, miRLAB, phenoTest, scTensor
Suggests Me	qpgraph, RnBeads, maGUI
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.