Bioconductor - CCPlotR

This is the released version of CCPlotR; for the devel version, see CCPlotR.

Plots For Visualising Cell-Cell Interactions

Bioconductor version: Release (3.22)

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Author: Sarah Ennis [aut, cre] ORCID: 0000-0001-6100-8573 , Pilib Ó Broin [aut], Eva Szegezdi [aut]

Maintainer: Sarah Ennis <ennissarah94 at gmail.com>

Citation (from within R, enter citation("CCPlotR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCPlotR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPlotR")

Details

biocViews	CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.18 (R-4.3) (2.5 years)
License	MIT + file LICENSE
Depends
Imports	plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods
System Requirements
URL	https://github.com/Sarah145/CCPlotR
Bug Reports	https://github.com/Sarah145/CCPlotR/issues

Package Archives

Follow Installation instructions to use this package in your R session.