Bioconductor - CellNOptR

Bioconductor - CellNOptR
Bioconductor 3.22
Software Packages
CellNOptR
CellNOptR
This is the
released
version of CellNOptR; for the devel version, see
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
DOI:
10.18129/B9.bioc.CellNOptR
Bioconductor version:
Release (3.22)
This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.
Author:
Thomas Cokelaer [aut], Federica Eduati [aut], Aidan MacNamara [aut], S Schrier [ctb], Camille Terfve [aut], Enio Gjerga [ctb], Attila Gabor [cre]
Maintainer:
Attila Gabor
Citation (from within R, enter
citation("CellNOptR")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("CellNOptR")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellNOptR")
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with CellNOptR
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Reference Manual
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Details
biocViews
CellBasedAssays
CellBiology
ImmunoOncology
Network
Pathways
Proteomics
Software
TimeCourse
Version
1.56.0
In Bioconductor since
BioC 2.9 (R-2.14) (14.5 years)
License
GPL-3
Depends
R (>= 4.0.0),
RBGL
graph
, methods,
RCurl
Rgraphviz
XML
ggplot2
rmarkdown
Imports
igraph
stringi
stringr
System Requirements
Graphviz version >= 2.2
URL
See More
Suggests
data.table
dplyr
tidyr
readr
knitr
RUnit
BiocGenerics
Linking To
Enhances
doParallel
foreach
Depends On Me
CNORdt
CNORfuzzy
CNORode
Imports Me
bnem
CNORfeeder
Suggests Me
MEIGOR
Links To Me
Build Report
Build Report
Package Archives
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Installation
instructions to use this package in your R session.
Source Package
CellNOptR_1.56.0.tar.gz
Windows Binary (x86_64)
CellNOptR_1.56.0.zip
(64-bit only)
macOS Binary (x86_64)
CellNOptR_1.56.0.tgz
macOS Binary (arm64)
CellNOptR_1.56.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/CellNOptR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/CellNOptR
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