Bioconductor - dStruct
Bioconductor 3.22
Software Packages
dStruct
dStruct
This is the
released
version of dStruct; for the devel version, see
dStruct
Identifying differentially reactive regions from RNA structurome profiling data
DOI:
10.18129/B9.bioc.dStruct
Bioconductor version:
Release (3.22)
dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.
Author:
Krishna Choudhary [aut, cre]
ORCID: 0000-0002-7966-1527
, Sharon Aviran [aut]
ORCID: 0000-0003-1872-9820
Maintainer:
Krishna Choudhary
Citation (from within R, enter
citation("dStruct")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dStruct")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dStruct")
Differential RNA structurome analysis using `dStruct`
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Reference Manual
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NEWS
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Details
biocViews
Sequencing
Software
StatisticalMethod
StructuralPrediction
Version
1.16.0
In Bioconductor since
BioC 3.14 (R-4.1) (4.5 years)
License
GPL (>= 2)
Depends
R (>= 4.1)
Imports
zoo
ggplot2
purrr
reshape2
, parallel,
IRanges
S4Vectors
rlang
, grDevices, stats, utils
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testthat
(>= 3.0.0)
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Source Package
dStruct_1.16.0.tar.gz
Windows Binary (x86_64)
dStruct_1.16.0.zip
macOS Binary (x86_64)
dStruct_1.16.0.tgz
macOS Binary (arm64)
dStruct_1.16.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/dStruct
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/dStruct
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