Bioconductor - fobitools

Bioconductor - fobitools
Bioconductor 3.22
Software Packages
fobitools
fobitools
This is the
released
version of fobitools; for the devel version, see
fobitools
Tools for Manipulating the FOBI Ontology
DOI:
10.18129/B9.bioc.fobitools
Bioconductor version:
Release (3.22)
A set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.
Author:
Pol Castellano-Escuder [aut, cre]
ORCID: 0000-0001-6466-877X
, Alex Sánchez-Pla [aut]
ORCID: 0000-0002-8673-7737
Maintainer:
Pol Castellano-Escuder
Citation (from within R, enter
citation("fobitools")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("fobitools")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fobitools")
Dietary text annotation
HTML
R Script
Simple food ORA
HTML
R Script
Use case ST000291
HTML
R Script
Use case ST000629
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
Annotation
BiomedicalInformatics
Cheminformatics
GeneSetEnrichment
GraphAndNetwork
MassSpectrometry
Metabolomics
Pathways
Software
Visualization
Version
1.18.0
In Bioconductor since
BioC 3.13 (R-4.1) (5 years)
License
GPL-3
Depends
R (>= 4.1)
Imports
clisymbols
crayon
dplyr
fgsea
ggplot2
ggraph
magrittr
ontologyIndex
purrr
RecordLinkage
stringr
textclean
tictoc
tidygraph
tidyr
vroom
System Requirements
URL
Bug Reports
See More
Suggests
BiocStyle
covr
ggrepel
kableExtra
knitr
metabolomicsWorkbenchR
POMA
rmarkdown
rvest
SummarizedExperiment
testthat
(>= 2.3.2),
tidyverse
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
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Installation
instructions to use this package in your R session.
Source Package
fobitools_1.18.0.tar.gz
Windows Binary (x86_64)
fobitools_1.18.0.zip
macOS Binary (x86_64)
fobitools_1.18.0.tgz
macOS Binary (arm64)
fobitools_1.18.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/fobitools
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/fobitools
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