This is the released version of genefilter; for the devel version, see genefilter.

genefilter: methods for filtering genes from high-throughput experiments


Bioconductor version: Release (3.22)

Some basic functions for filtering genes.

Author: Robert Gentleman [aut], Vincent J. Carey [aut], Wolfgang Huber [aut], Florian Hahne [aut], Emmanuel Taiwo [ctb] ('howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.), Khadijah Amusat [ctb] (Converted genefilter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genefilter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")
03 - Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010) PDF R Script
howtogenefinder.knit HTML R Script
Using the genefilter function to filter genes from a microarray HTML R Script
Reference Manual PDF
NEWS Text

Details

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Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer, BiocStyle, knitr
Linking To
Enhances
Depends On Me CNTools, GeneMeta, sva, Hiiragi2013, maEndToEnd, rnaseqGene, lmQCM
Imports Me a4Base, annmap, arrayQualityMetrics, broadSeq, Category, cbaf, ClassifyR, countsimQC, covRNA, DEXSeq, GSRI, metaseqR2, methylCC, methylumi, minfi, MLInterfaces, mogsa, NBAMSeq, pcaExplorer, PECA, phenoTest, protGear, spatialHeatmap, SpliceWiz, tilingArray, XDE, zinbwave, FlowSorted.Blood.EPIC, IHWpaper, causalBatch, CoNI, netgsa
Suggests Me annotate, BioNet, categoryCompare, clusterStab, codelink, cola, compcodeR, DelayedArray, EnrichedHeatmap, factDesign, ffpe, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, HDF5Array, logicFS, lumi, MMUPHin, npGSEA, oligo, phyloseq, pvac, qpgraph, rtracklayer, siggenes, simplifyEnrichment, TCGAbiolinks, topGO, BloodCancerMultiOmics2017, curatedBladderData, curatedOvarianData, estrogen, ffpeExampleData, gageData, MAQCsubset, RforProteomics, rheumaticConditionWOLLBOLD, Single.mTEC.Transcriptomes, maGUI, SRscore, SuperLearner
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.