Bioconductor - GOstats

Bioconductor - GOstats
Bioconductor 3.22
Software Packages
GOstats
GOstats
This is the
released
version of GOstats; for the devel version, see
GOstats
Tools for manipulating GO and microarrays
DOI:
10.18129/B9.bioc.GOstats
Bioconductor version:
Release (3.22)
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Author:
Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Sonali Kumari [ctb] (Converted vignettes from Sweave to R Markdown / HTML.), Dennis Ndubi [ctb] (Converted GOstatsHyperG vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer:
Bioconductor Package Maintainer
Citation (from within R, enter
citation("GOstats")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("GOstats")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOstats")
How To Use GOstats and Category to do Hypergeometric testing with unsupported model organisms
HTML
R Script
Hypergeometric Tests Using GOstats
HTML
R Script
Visualizing and Distances Using GO
HTML
R Script
Reference Manual
PDF
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
Annotation
GO
GeneExpression
GeneSetEnrichment
GraphAndNetwork
Microarray
MultipleComparison
Pathways
Software
Version
2.76.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 21 years)
License
Artistic-2.0
Depends
R (>= 2.10),
Biobase
(>= 1.15.29),
Category
(>= 2.43.2),
graph
Imports
methods, stats, stats4,
AnnotationDbi
(>= 0.0.89),
GO.db
(>= 1.13.0),
RBGL
annotate
(>= 1.13.2),
AnnotationForge
Rgraphviz
System Requirements
URL
See More
Suggests
hgu95av2.db
(>= 1.13.0),
ALL
multtest
genefilter
RColorBrewer
xtable
SparseM
GSEABase
geneplotter
org.Hs.eg.db
RUnit
BiocGenerics
BiocStyle
knitr
Linking To
Enhances
Depends On Me
MineICA
Imports Me
affycoretools
attract
categoryCompare
GmicR
ideal
miRLAB
pcaExplorer
scTensor
Suggests Me
a4
Category
fastLiquidAssociation
fgga
GSEAlm
interactiveDisplay
MineICA
MLP
netZooR
qpgraph
RnBeads
safe
maGUI
sand
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
GOstats_2.76.0.tar.gz
Windows Binary (x86_64)
GOstats_2.76.0.zip
macOS Binary (x86_64)
GOstats_2.76.0.tgz
macOS Binary (arm64)
GOstats_2.76.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/GOstats
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/GOstats
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