Bioconductor - graph

Bioconductor - graph
Bioconductor 3.22
Software Packages
graph
graph
This is the
released
version of graph; for the devel version, see
graph
graph: A package to handle graph data structures
DOI:
10.18129/B9.bioc.graph
Bioconductor version:
Release (3.22)
A package that implements some simple graph handling capabilities.
Author:
R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer:
Bioconductor Package Maintainer
Citation (from within R, enter
citation("graph")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("graph")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graph")
Attributes for Graph Objects
HTML
R Script
clusterGraph and distGraph
HTML
R Script
Graph Design
HTML
R Script
graphBAM and MultiGraph Classes
HTML
R Script
How to use the graph package
HTML
R Script
Reference Manual
PDF
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
GraphAndNetwork
Software
Version
1.88.1
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 21 years)
License
Artistic-2.0
Depends
R (>= 2.10), methods,
BiocGenerics
(>= 0.13.11)
Imports
stats, stats4, utils
System Requirements
URL
See More
Suggests
SparseM
(>= 0.36),
XML
RBGL
RUnit
cluster
BiocStyle
knitr
Linking To
Enhances
Rgraphviz
Depends On Me
apComplex
biocGraph
BioMVCClass
BioNet
BLMA
CellNOptR
clipper
CNORfeeder
EnrichmentBrowser
GOstats
GraphAT
GSEABase
hypergraph
keggorthology
MineICA
pathRender
Pigengene
RbcBook1
RBGL
RCyjs
Rgraphviz
ROntoTools
SRAdb
topGO
vtpnet
DLBCL
SNAData
yeastExpData
cyjShiny
dlsem
gridGraphviz
PairViz
PerfMeas
Imports Me
AnnotationHubData
BgeeDB
BiocCheck
BiocFHIR
biocGraph
BiocPkgTools
biocViews
bnem
CAMERA
Category
categoryCompare
chimeraviz
ChIPpeakAnno
CHRONOS
consICA
CytoML
DEGraph
DEsubs
EnrichDO
epiNEM
EventPointer
fgga
flowClust
flowWorkspace
gage
GeneNetworkBuilder
GenomicInteractionNodes
GraphAT
graphite
hyperdraw
KEGGgraph
MIRit
mnem
MOSClip
NCIgraph
netresponse
OncoSimulR
ontoProc
openCyto
oposSOM
OrganismDbi
pathview
qpgraph
RCy3
RGraph2js
rsbml
scGraphVerse
SplicingGraphs
Streamer
VariantFiltering
BioPlex
abn
BayesNetBP
BCDAG
BiDAG
BNrich
CePa
classGraph
clustNet
CodeDepends
cogmapr
ggm
gridDebug
net4pg
netgsa
NetPreProc
pcalg
pcgen
rags2ridges
RANKS
RCPA
rsolr
rSpectral
SEMgraph
stablespec
topologyGSA
tpc
unifDAG
Suggests Me
anansi
AnnotationDbi
DAPAR
DEGraph
EBcoexpress
ecolitk
gwascat
KEGGlincs
MLP
NetPathMiner
omXplore
rBiopaxParser
RCX
rTRM
S4Vectors
SPIA
VariantTools
arulesViz
bnlearn
bnstruct
bsub
caugi
ChoR
gbutils
GeneNet
gMCP
lava
loon
maGUI
netmeta
psych
rCausalMGM
rEMM
rPref
sisal
textplot
tidygraph
zenplots
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
graph_1.88.1.tar.gz
Windows Binary (x86_64)
graph_1.88.1.zip
(64-bit only)
macOS Binary (x86_64)
graph_1.88.1.tgz
macOS Binary (arm64)
graph_1.88.1.tgz
Source Repository
git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser
Package Short Url
Package Downloads Report
Download Stats
Old Source Packages for BioC 3.22
Source Archive