h5vc

This is the released version of h5vc; for the devel version, see h5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: Release (3.22)

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, enter citation("h5vc")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("h5vc")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")

biocViews	Software
Version	2.44.0
In Bioconductor since	BioC 2.13 (R-3.0) (12.5 years)
License	GPL (>= 3)
Depends	grid, gridExtra, ggplot2
Imports	rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 2.13.1), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
System Requirements	GNU make
URL

Follow Installation instructions to use this package in your R session.