m6Aboost

This is the released version of m6Aboost; for the devel version, see m6Aboost.

m6Aboost


Bioconductor version: Release (3.22)

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Author: You Zhou [aut, cre] ORCID iD ORCID: 0000-0003-1755-9073 , Kathi Zarnack [aut] ORCID iD ORCID: 0000-0003-3527-3378

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("m6Aboost")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("m6Aboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("m6Aboost")

Details

biocViews Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 3.14 (R-4.1) (4.5 years)
License Artistic-2.0
Depends S4Vectors, adabag, GenomicRanges, R (>= 4.1)
Imports dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub
System Requirements
URL https://github.com/ZarnackGroup/m6Aboost
Bug Reports https://github.com/ZarnackGroup/m6Aboost/issues
See More

Package Archives

Follow Installation instructions to use this package in your R session.