This is the
released
version of miaTime; for the devel version, see
miaTime
Microbiome Time Series Analysis
Bioconductor version:
Release (3.22)
The `miaTime` package provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.
Author:
Leo Lahti [aut]
ORCID: 0000-0001-5537-637X
, Tuomas Borman [aut, cre]
ORCID: 0000-0002-8563-8884
, Yagmur Simsek [aut], Sudarshan Shetty [ctb], Chouaib Benchraka [ctb], Muluh Muluh [ctb], Ali Hajj [ctb]
Maintainer:
Tuomas Borman
Citation (from within R, enter
citation("miaTime")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaTime")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaTime")
Details
biocViews
Microbiome
Sequencing
Software
Version
1.0.0
In Bioconductor since
BioC 3.22 (R-4.5) (< 6 months)
License
Artistic-2.0 | file
LICENSE
Depends
R (>= 4.5.0),
mia
Imports
dplyr
, methods,
S4Vectors
SingleCellExperiment
, stats,
SummarizedExperiment
tidyr
TreeSummarizedExperiment
System Requirements
URL
Bug Reports
See More
Package Archives
Follow
Installation
instructions to use this package in your R session.