Bioconductor - NanoStringNCTools
Bioconductor 3.22
Software Packages
NanoStringNCTools
NanoStringNCTools
This is the
released
version of NanoStringNCTools; for the devel version, see
NanoStringNCTools
NanoString nCounter Tools
DOI:
10.18129/B9.bioc.NanoStringNCTools
Bioconductor version:
Release (3.22)
Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.
Author:
Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]
Maintainer:
Maddy Griswold
Citation (from within R, enter
citation("NanoStringNCTools")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NanoStringNCTools")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringNCTools")
Introduction to the NanoStringRCCSet Class
HTML
R Script
Reference Manual
PDF
NEWS
Text
LICENSE
Text
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Details
biocViews
CellBasedAssays
DataImport
GeneExpression
ProprietaryPlatforms
Proteomics
RNASeq
Software
Transcription
Transcriptomics
mRNAMicroarray
Version
1.18.0
In Bioconductor since
BioC 3.13 (R-4.1) (5 years)
License
MIT
Depends
R (>= 3.6),
Biobase
S4Vectors
ggplot2
Imports
BiocGenerics
Biostrings
ggbeeswarm
ggiraph
ggthemes
, grDevices,
IRanges
, methods,
pheatmap
RColorBrewer
, stats, utils
System Requirements
URL
See More
Suggests
biovizBase
ggbio
RUnit
rmarkdown
knitr
qpdf
Linking To
Enhances
Depends On Me
GeomxTools
GeoMxWorkflows
Imports Me
GeoDiff
Suggests Me
Links To Me
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Installation
instructions to use this package in your R session.
Source Package
NanoStringNCTools_1.18.0.tar.gz
Windows Binary (x86_64)
NanoStringNCTools_1.18.0.zip
macOS Binary (x86_64)
NanoStringNCTools_1.18.0.tgz
macOS Binary (arm64)
NanoStringNCTools_1.18.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/NanoStringNCTools
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/NanoStringNCTools
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