Bioconductor - ncRNAtools

Bioconductor - ncRNAtools
Bioconductor 3.22
Software Packages
ncRNAtools
ncRNAtools
This is the
released
version of ncRNAtools; for the devel version, see
ncRNAtools
An R toolkit for non-coding RNA
DOI:
10.18129/B9.bioc.ncRNAtools
Bioconductor version:
Release (3.22)
ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.
Author:
Lara Selles Vidal [cre, aut]
ORCID: 0000-0003-2537-6824
, Rafael Ayala [aut]
ORCID: 0000-0002-9332-4623
, Guy-Bart Stan [aut]
ORCID: 0000-0002-5560-902X
, Rodrigo Ledesma-Amaro [aut]
ORCID: 0000-0003-2631-5898
Maintainer:
Lara Selles Vidal
Citation (from within R, enter
citation("ncRNAtools")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("ncRNAtools")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ncRNAtools")
rfaRm
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
DataImport
FunctionalGenomics
Software
StructuralPrediction
ThirdPartyClient
Visualization
Version
1.20.0
In Bioconductor since
BioC 3.12 (R-4.0) (5.5 years)
License
GPL-3
Depends
Imports
httr
xml2
, utils, methods, grDevices,
ggplot2
IRanges
GenomicRanges
S4Vectors
System Requirements
URL
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knitr
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Build Report
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Follow
Installation
instructions to use this package in your R session.
Source Package
ncRNAtools_1.20.0.tar.gz
Windows Binary (x86_64)
ncRNAtools_1.20.0.zip
(64-bit only)
macOS Binary (x86_64)
ncRNAtools_1.20.0.tgz
macOS Binary (arm64)
ncRNAtools_1.20.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/ncRNAtools
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