This is the released version of notameStats; for the devel version, see notameStats.

Workflow for non-targeted LC-MS metabolic profiling


Bioconductor version: Release (3.22)

Provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.

Author: Anton Klåvus [aut, cph] ORCID iD ORCID: 0000-0003-2612-0230 , Jussi Paananen [aut, cph] ORCID iD ORCID: 0000-0001-5100-4907 , Oskari Timonen [aut, cph] ORCID iD ORCID: 0000-0002-6317-6260 , Atte Lihtamo [aut], Vilhelm Suksi [aut, cre] ORCID iD ORCID: 0009-0005-1108-518X , Retu Haikonen [aut] ORCID iD ORCID: 0000-0003-0830-3850 , Leo Lahti [aut] ORCID iD ORCID: 0000-0001-5537-637X , Kati Hanhineva [aut] ORCID iD ORCID: 0000-0001-6834-7375 , Ville Koistinen [ctb] ORCID iD ORCID: 0000-0003-1587-8361 , Olli Kärkkäinen [ctb] ORCID iD ORCID: 0000-0003-0825-4956 , Artur Sannikov [ctb]

Maintainer: Vilhelm Suksi <vksuks at utu.fi>

Citation (from within R, enter citation("notameStats")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("notameStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("notameStats")

Details

biocViews BatchEffect, BiomedicalInformatics, DataImport, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.5.0), SummarizedExperiment
Imports BiocGenerics, BiocParallel, broom, dplyr, methods, notame, stats, tibble, tidyr, utils
System Requirements
URL https://github.com/hanhineva-lab/notameStats
Bug Reports https://github.com/hanhineva-lab/notameStats/issues
See More
Suggests BiocStyle, car, knitr, lmerTest, mixOmics, MuMIn, MUVR2, notameViz, PERMANOVA, PK, randomForest, rmcorr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me notame, notameViz
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.