Bioconductor - pandaR
Bioconductor 3.22
Software Packages
pandaR
pandaR
This is the
released
version of pandaR; for the devel version, see
pandaR
PANDA Algorithm
DOI:
10.18129/B9.bioc.pandaR
Bioconductor version:
Release (3.22)
Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
Author:
Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass
Maintainer:
Joseph N. Paulson
Citation (from within R, enter
citation("pandaR")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pandaR")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pandaR")
pandaR Package
HTML
R Script
Reference Manual
PDF
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
GeneExpression
GeneRegulation
GraphAndNetwork
Microarray
Network
NetworkInference
Software
StatisticalMethod
Transcription
Version
1.42.0
In Bioconductor since
BioC 3.1 (R-3.2) (11 years)
License
GPL-2
Depends
R (>= 3.0.0), methods,
Biobase
BiocGenerics
Imports
matrixStats
igraph
ggplot2
, grid,
reshape
plyr
RUnit
hexbin
System Requirements
URL
See More
Suggests
knitr
rmarkdown
Linking To
Enhances
Depends On Me
netZooR
Imports Me
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
pandaR_1.42.0.tar.gz
Windows Binary (x86_64)
pandaR_1.42.0.zip
(64-bit only)
macOS Binary (x86_64)
pandaR_1.42.0.tgz
macOS Binary (arm64)
pandaR_1.42.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/pandaR
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