Bioconductor - pRolocGUI

This is the released version of pRolocGUI; for the devel version, see pRolocGUI.

Interactive visualisation of spatial proteomics data

Bioconductor version: Release (3.22)

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa Breckels [aut, cre] ORCID: 0000-0001-8918-7171 , Thomas Naake [aut], Laurent Gatto [aut] ORCID: 0000-0002-1520-2268

Maintainer: Lisa Breckels <lms79 at cam.ac.uk>

Citation (from within R, enter citation("pRolocGUI")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRolocGUI")

pRolocGUI - Interactive visualisation of spatial proteomics data	HTML	R Script
Reference Manual	PDF
pRoloc, pRolocdata and pRolocGUI	Video

biocViews	GUI, Proteomics, Software, Visualization
Version	2.20.0
In Bioconductor since	BioC 3.0 (R-3.1) (11.5 years)
License	GPL-2
Depends	methods, R (>= 3.1.0), pRoloc(>= 1.27.6), Biobase, MSnbase(>= 2.1.11)
Imports	shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard
System Requirements
URL	https://github.com/lgatto/pRolocGUI
Bug Reports	https://github.com/lgatto/pRolocGUI/issues

Follow Installation instructions to use this package in your R session.