Bioconductor - QFeatures

Bioconductor - QFeatures
Bioconductor 3.22
Software Packages
QFeatures
QFeatures
This is the
released
version of QFeatures; for the devel version, see
QFeatures
Quantitative features for mass spectrometry data
DOI:
10.18129/B9.bioc.QFeatures
Bioconductor version:
Release (3.22)
The QFeatures infrastructure enables the management and processing of quantitative features for high-throughput mass spectrometry assays. It provides a familiar Bioconductor user experience to manages quantitative data across different assay levels (such as peptide spectrum matches, peptides and proteins) in a coherent and tractable format.
Author:
Laurent Gatto [aut, cre]
ORCID: 0000-0002-1520-2268
, Christophe Vanderaa [aut]
ORCID: 0000-0001-7443-5427
, Léopold Guyot [ctb]
Maintainer:
Laurent Gatto
Citation (from within R, enter
citation("QFeatures")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("QFeatures")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QFeatures")
Data visualization from a QFeatures object
HTML
R Script
Load data using readQFeatures()
HTML
R Script
Processing quantitative proteomics data with QFeatures
HTML
R Script
Quantitative features for mass spectrometry data
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
Infrastructure
MassSpectrometry
Metabolomics
Proteomics
Software
Version
1.20.0
In Bioconductor since
BioC 3.12 (R-4.0) (5.5 years)
License
Artistic-2.0
Depends
R (>= 4.1),
MultiAssayExperiment
(>= 1.33.6)
Imports
methods, stats, utils,
S4Vectors
IRanges
SummarizedExperiment
BiocGenerics
(>= 0.53.4),
ProtGenerics
(>= 1.35.1),
AnnotationFilter
lazyeval
Biobase
MsCoreUtils
(>= 1.7.2),
igraph
, grDevices,
plotly
tidyr
tidyselect
reshape2
System Requirements
URL
Bug Reports
See More
Suggests
SingleCellExperiment
MsDataHub
(>= 1.3.3),
Matrix
HDF5Array
msdata
ggplot2
gplots
dplyr
limma
DT
shiny
shinydashboard
testthat
knitr
BiocStyle
rmarkdown
vsn
preprocessCore
matrixStats
imputeLCMD
pcaMethods
impute
norm
ComplexHeatmap
Linking To
Enhances
Depends On Me
hdxmsqc
msqrob2
scp
scpdata
Imports Me
MetaboAnnotation
MsExperiment
mspms
omicsGMF
PSMatch
Suggests Me
MsDataHub
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
QFeatures_1.20.0.tar.gz
Windows Binary (x86_64)
QFeatures_1.20.0.zip
macOS Binary (x86_64)
QFeatures_1.20.0.tgz
macOS Binary (arm64)
QFeatures_1.20.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/QFeatures
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/QFeatures
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