rTRM

This is the released version of rTRM; for the devel version, see rTRM.

Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks

Bioconductor version: Release (3.22)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRM")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

Suggests	RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	rTRMui
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.