Bioconductor - trackViewer

Bioconductor - trackViewer
Bioconductor 3.22
Software Packages
trackViewer
trackViewer
This is the
released
version of trackViewer; for the devel version, see
trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
DOI:
10.18129/B9.bioc.trackViewer
Bioconductor version:
Release (3.22)
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Author:
Jianhong Ou [aut, cre]
ORCID: 0000-0002-8652-2488
, Julie Lihua Zhu [aut]
Maintainer:
Jianhong Ou
Citation (from within R, enter
citation("trackViewer")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("trackViewer")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("trackViewer")
trackViewer Vignette: change the track styles
HTML
R Script
trackViewer Vignette: dandelionPlot
HTML
R Script
trackViewer Vignette: lollipopPlot
HTML
R Script
trackViewer Vignette: overview
HTML
R Script
trackViewer Vignette: plot interaction data
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
Software
Visualization
Version
1.46.0
In Bioconductor since
BioC 2.14 (R-3.1) (12 years)
License
GPL (>= 2)
Depends
R (>= 3.5.0), grDevices, methods,
GenomicRanges
, grid
Imports
Seqinfo
GenomeInfoDb
GenomicAlignments
GenomicFeatures
Gviz
Rsamtools
S4Vectors
rtracklayer
BiocGenerics
scales
, tools,
IRanges
AnnotationDbi
grImport
htmlwidgets
InteractionSet
, utils,
rhdf5
strawr
txdbmaker
System Requirements
URL
See More
Suggests
biomaRt
TxDb.Hsapiens.UCSC.hg19.knownGene
RUnit
org.Hs.eg.db
BiocStyle
knitr
VariantAnnotation
httr
htmltools
rmarkdown
motifStack
Linking To
Enhances
Depends On Me
Imports Me
geomeTriD
NADfinder
Suggests Me
ATACseqQC
ChIPpeakAnno
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
trackViewer_1.46.0.tar.gz
Windows Binary (x86_64)
trackViewer_1.46.0.zip
macOS Binary (x86_64)
trackViewer_1.46.0.tgz
macOS Binary (arm64)
trackViewer_1.46.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/trackViewer
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/trackViewer
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