This is the released version of TreeAndLeaf; for the devel version, see TreeAndLeaf.

Displaying binary trees with focus on dendrogram leaves


Bioconductor version: Release (3.22)

TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.

Author: Milena Cardoso [aut], Luis Rizzardi [aut], Leonardo Kume [aut], Sheyla Trefflich [ctb], Clarice Groeneveld [ctb], Mauro Castro [aut, cre] ORCID iD ORCID: 0000-0003-4942-8131

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("TreeAndLeaf")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")

Details

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Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
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Follow Installation instructions to use this package in your R session.