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KR-MED 2006
Formal Biomedical Knowledge Representation
Proceedings of the Second International Workshop
on Formal Biomedical Knowledge Representation: "Biomedical Ontology in Action" (
KR-MED 2006
Collocated with the 4th International Conference on Formal Ontology in Information Systems (
FOIS-2006
Baltimore, Maryland, USA, November 8, 2006.
Edited by:
Olivier Bodenreider
, National Library of Medicine, USA
Forewords:
Biomedical Ontology
in Action
Table of Contents
Papers
Registration in Practice: Comparing Free-Text and Compositional Terminological
System Based Registration of ICU Reasons for Admission
(pp. 3-9)
Nicolette de Keizer, Ronald Cornet, Ferishta Bakhshi-Raiez, Evert de Jonge
Binding Ontologies & Coding Systems to Electronic Health Records and Messages
(pp. 11-19)
AL Rector, R Qamar, T Marley
Using Ontology Graphs to Understand Annotations and Reason about Them
(pp. 21-29)
Mary E. Dolan, Judith A. Blake
An Online Ontology: WiktionaryZ
(pp. 31-36)
Erik M. van Mulligen, Erik Möller, Peter-Jan Roes, Marc Weeber, Gerard Meijssen, Barend Mons
"Lmo-2 interacts with elf-2" On the Meaning of Common Statements in Biomedical Literature
(pp. 37-45)
Stefan Schulz, Ludger Jansen
The Qualitative and Time-Dependent Character of Spatial Relations in Biomedical Ontologies
(pp. 47-55)
Thomas Bittner, Louis J. Goldberg
Towards a Reference Terminology for Ontology Research
and Development in the Biomedical Domain
(pp. 57-65)
Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters
LinKBase®, a Philosophically-Inspired Ontology for NLP/NLU Applications
(pp. 67-75)
Maria van Gurp, Manuel Decoene, Marnix Holvoet, Mariana Casella dos Santos
The Development of a Schema for the Annotation of Terms
in the Biocaster Disease Detecting/Tracking System
(pp. 77-85)
Ai Kawazoe, Lihua Jin, Mika Shigematsu, Roberto Barerro, Kiyosu Taniguchi, Nigel Collier
BioFrameNet: A Domain-Specific FrameNet Extension with Links to Biomedical Ontologies
(pp. 87-94)
Andrew Dolbey, Michael Ellsworth, Jan Scheffczyk
Posters
A CPG-Based Ontology Driven Clinical Decision Support System for Breast Cancer Follow-Up
(p. 97)
Samina Raza Abidi
Inferring Gene Ontology Category Membership via
Gene Expression and Sequence Similarity Data Analysis
(p. 98)
Murilo Saraiva Queiroz, Francisco Prosdocimi, Izabela Freire Goertzel, Francisco Pereira Lobo,
Cassio Pennachin, Ben Goertzel
Experience with an Ontology of Pediatric Electrolyte Disorders in a Developing Country
(p. 99)
Vorapong Chaichanamongkol, Wanwipa Titthasiri
Issues in Representing Biological and Clinical Phenotypes Using the Formal Models
(p. 100)
Ying Tao, Chintan Patel, Carol Friedman, Yves A. Lussier
submitted by Olivier Bodenreider, 27-Nov-2006
published on CEUR-WS.org, 27-Nov-2006