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Structures of segments of α-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation. Protein Sci. 2011 Jun; 20(6):996-1004. Zhao M, Cascio D, Sawaya MR, Eisenberg D. PMID: 21462277; PMCID: PMC3104229.
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Atomic structures suggest determinants of transmission barriers in mammalian prion disease. Biochemistry. 2011 Apr 05; 50(13):2456-63. Apostol MI, Wiltzius JJ, Sawaya MR, Cascio D, Eisenberg D. PMID: 21323366; PMCID: PMC3068218.
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Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima. Protein Sci. 2011 Jan; 20(1):168-78. Forse GJ, Ram N, Banatao DR, Cascio D, Sawaya MR, Klock HE, Lesley SA, Yeates TO. PMID: 21082721; PMCID: PMC3047073.
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The crystal structure of the Mycobacterium tuberculosis Rv3019c-Rv3020c ESX complex reveals a domain-swapped heterotetramer. Protein Sci. 2010 Sep; 19(9):1692-703. Arbing MA, Kaufmann M, Phan T, Chan S, Cascio D, Eisenberg D. PMID: 20629176; PMCID: PMC2975133.
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Crystallographic studies of prion protein (PrP) segments suggest how structural changes encoded by polymorphism at residue 129 modulate susceptibility to human prion disease. J Biol Chem. 2010 Sep 24; 285(39):29671-5. Apostol MI, Sawaya MR, Cascio D, Eisenberg D. PMID: 20685658; PMCID: PMC2943325.
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Structure of the dimerization domain of DiGeorge critical region 8. Protein Sci. 2010 Jul; 19(7):1354-65. Senturia R, Faller M, Yin S, Loo JA, Cascio D, Sawaya MR, Hwang D, Clubb RT, Guo F. PMID: 20506313; PMCID: PMC2974827.
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Crystal structures of truncated alphaA and alphaB crystallins reveal structural mechanisms of polydispersity important for eye lens function. Protein Sci. 2010 May; 19(5):1031-43. Laganowsky A, Benesch JL, Landau M, Ding L, Sawaya MR, Cascio D, Huang Q, Robinson CV, Horwitz J, Eisenberg D. PMID: 20440841; PMCID: PMC2868245.
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The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev. 2010 Apr 15; 24(8):814-26. Stella S, Cascio D, Johnson RC. PMID: 20395367; PMCID: PMC2854395.
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Site-directed spin labeling of a genetically encoded unnatural amino acid. Proc Natl Acad Sci U S A. 2009 Dec 22; 106(51):21637-42. Fleissner MR, Brustad EM, Kálai T, Altenbach C, Cascio D, Peters FB, Hideg K, Peuker S, Schultz PG, Hubbell WL. PMID: 19995976; PMCID: PMC2799802.
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Molecular mechanisms for protein-encoded inheritance. Nat Struct Mol Biol. 2009 Sep; 16(9):973-8. Wiltzius JJ, Landau M, Nelson R, Sawaya MR, Apostol MI, Goldschmidt L, Soriaga AB, Cascio D, Rajashankar K, Eisenberg D. PMID: 19684598; PMCID: PMC3640378.
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Crystal packing analysis of murine VDAC1 crystals in a lipidic environment reveals novel insights on oligomerization and orientation. Channels (Austin). 2009 May-Jun; 3(3):167-70. Ujwal R, Cascio D, Chaptal V, Ping P, Abramson J. PMID: 19574737; PMCID: PMC3719987.
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Structural origin of weakly ordered nitroxide motion in spin-labeled proteins. Protein Sci. 2009 May; 18(5):893-908. Fleissner MR, Cascio D, Hubbell WL. PMID: 19384990; PMCID: PMC2771293.
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Structure and functional studies of the CS domain of the essential H/ACA ribonucleoparticle assembly protein SHQ1. J Biol Chem. 2009 Jan 16; 284(3):1906-16. Singh M, Gonzales FA, Cascio D, Heckmann N, Chanfreau G, Feigon J. PMID: 19019820; PMCID: PMC2615527.
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The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating. Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46):17742-7. Ujwal R, Cascio D, Colletier JP, Faham S, Zhang J, Toro L, Ping P, Abramson J. PMID: 18988731; PMCID: PMC2584669.
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Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis. J Biol Chem. 2009 Jan 02; 284(1):276-283. Miallau L, Faller M, Chiang J, Arbing M, Guo F, Cascio D, Eisenberg D. PMID: 18952600; PMCID: PMC2610494.
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The crystal structure of a sodium galactose transporter reveals mechanistic insights into Na+/sugar symport. Science. 2008 Aug 08; 321(5890):810-4. Faham S, Watanabe A, Besserer GM, Cascio D, Specht A, Hirayama BA, Wright EM, Abramson J. PMID: 18599740; PMCID: PMC3654663.
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Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin). Protein Sci. 2008 Sep; 17(9):1467-74. Wiltzius JJ, Sievers SA, Sawaya MR, Cascio D, Popov D, Riekel C, Eisenberg D. PMID: 18556473; PMCID: PMC2525530.
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Structures and functional implications of an AMP-binding cystathionine beta-synthase domain protein from a hyperthermophilic archaeon. J Mol Biol. 2008 Jun 27; 380(1):181-92. King NP, Lee TM, Sawaya MR, Cascio D, Yeates TO. PMID: 18513746; PMCID: PMC2577872.
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How does regulatory Ca2+ regulate the Na+-Ca2+ exchanger? Channels (Austin). 2007 Nov-Dec; 1(6):397-9. Chaptal V, Besserer GM, Ottolia M, Nicoll DA, Cascio D, Philipson KD, Abramson J. PMID: 18690047.
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Structural determinants of nitroxide motion in spin-labeled proteins: solvent-exposed sites in helix B of T4 lysozyme. Protein Sci. 2008 Feb; 17(2):228-39. Guo Z, Cascio D, Hideg K, Hubbell WL. PMID: 18096642; PMCID: PMC2222722.
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The second Ca2+-binding domain of the Na+ Ca2+ exchanger is essential for regulation: crystal structures and mutational analysis. Proc Natl Acad Sci U S A. 2007 Nov 20; 104(47):18467-72. Besserer GM, Ottolia M, Nicoll DA, Chaptal V, Cascio D, Philipson KD, Abramson J. PMID: 17962412; PMCID: PMC2141800.
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Structural determinants of nitroxide motion in spin-labeled proteins: tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme. Protein Sci. 2007 Jun; 16(6):1069-86. Guo Z, Cascio D, Hideg K, Kálái T, Hubbell WL. PMID: 17473014; PMCID: PMC2206656.
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Discovery of a thermophilic protein complex stabilized by topologically interlinked chains. J Mol Biol. 2007 May 18; 368(5):1332-44. Boutz DR, Cascio D, Whitelegge J, Perry LJ, Yeates TO. PMID: 17395198; PMCID: PMC1955483.
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Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proc Natl Acad Sci U S A. 2007 Feb 13; 104(7):2109-14. Abbani MA, Papagiannis CV, Sam MD, Cascio D, Johnson RC, Clubb RT. PMID: 17287355; PMCID: PMC1893000.
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Fis targets assembly of the Xis nucleoprotein filament to promote excisive recombination by phage lambda. J Mol Biol. 2007 Mar 23; 367(2):328-43. Papagiannis CV, Sam MD, Abbani MA, Yoo D, Cascio D, Clubb RT, Johnson RC. PMID: 17275024; PMCID: PMC1852488.
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An approach to crystallizing proteins by synthetic symmetrization. Proc Natl Acad Sci U S A. 2006 Oct 31; 103(44):16230-5. Banatao DR, Cascio D, Crowley CS, Fleissner MR, Tienson HL, Yeates TO. PMID: 17050682; PMCID: PMC1637565.
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Crystallization, dehydration and preliminary X-ray analysis of excisionase (Xis) proteins cooperatively bound to DNA. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Aug 01; 62(Pt 8):825-8. Sam MD, Abbani MA, Cascio D, Johnson RC, Clubb RT. PMID: 16880568; PMCID: PMC2242933.
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The crystal structure of the primary Ca2+ sensor of the Na+/Ca2+ exchanger reveals a novel Ca2+ binding motif. J Biol Chem. 2006 Aug 04; 281(31):21577-21581. Nicoll DA, Sawaya MR, Kwon S, Cascio D, Philipson KD, Abramson J. PMID: 16774926.
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Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc Natl Acad Sci U S A. 2006 May 23; 103(21):8060-5. Strong M, Sawaya MR, Wang S, Phillips M, Cascio D, Eisenberg D. PMID: 16690741; PMCID: PMC1472429.
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Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer. J Biol Chem. 2005 Jul 29; 280(30):27769-75. Kim CA, Sawaya MR, Cascio D, Kim W, Bowie JU. PMID: 15905166.
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Crystal structures of a tetrahedral open pore ferritin from the hyperthermophilic archaeon Archaeoglobus fulgidus. Structure. 2005 Apr; 13(4):637-48. Johnson E, Cascio D, Sawaya MR, Gingery M, Schröder I. PMID: 15837202.
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Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J Mol Biol. 2004 Aug 06; 341(2):503-17. Chan S, Segelke B, Lekin T, Krupka H, Cho US, Kim MY, So M, Kim CY, Naranjo CM, Rogers YC, Park MS, Waldo GS, Pashkov I, Cascio D, Perry JL, Sawaya MR. PMID: 15276840.
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A web-based comparative genomics tutorial for investigating microbial genomes. Microbiol Educ. 2004 May; 5:30-5. Strong M, Cascio D, Eisenberg D. PMID: 23653555; PMCID: PMC3633132.
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Crystal structure of the excisionase-DNA complex from bacteriophage lambda. J Mol Biol. 2004 Apr 23; 338(2):229-40. Sam MD, Cascio D, Johnson RC, Clubb RT. PMID: 15066428.
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Structural genomics of Mycobacterium tuberculosis: a preliminary report of progress at UCLA. Biophys Chem. 2003 Sep; 105(2-3):361-70. Goulding CW, Perry LJ, Anderson D, Sawaya MR, Cascio D, Apostol MI, Chan S, Parseghian A, Wang SS, Wu Y, Cassano V, Gill HS, Eisenberg D. PMID: 14499904.
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Structural and EPR characterization of the soluble form of cytochrome c-550 and of the psbV2 gene product from the cyanobacterium Thermosynechococcus elongatus. Plant Cell Physiol. 2003 Jul; 44(7):697-706. Kerfeld CA, Sawaya MR, Bottin H, Tran KT, Sugiura M, Cascio D, Desbois A, Yeates TO, Kirilovsky D, Boussac A. PMID: 12881497.
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Crystallization and preliminary X-ray crystallographic analysis of the excisionase-DNA complex from bacteriophage lambda. Acta Crystallogr D Biol Crystallogr. 2003 Jul; 59(Pt 7):1238-40. Sam MD, Cascio D, Johnson R, Clubb RT. PMID: 12832771.
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The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus. J Biol Inorg Chem. 2003 Sep; 8(7):707-14. Kerfeld CA, Yoshida S, Tran KT, Yeates TO, Cascio D, Bottin H, Berthomieu C, Sugiura M, Boussac A. PMID: 12827458.
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Granulysin crystal structure and a structure-derived lytic mechanism. J Mol Biol. 2003 Jan 10; 325(2):355-65. Anderson DH, Sawaya MR, Cascio D, Ernst W, Modlin R, Krensky A, Eisenberg D. PMID: 12488100.
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The crystal structure of a cyanobacterial water-soluble carotenoid binding protein. Structure. 2003 Jan; 11(1):55-65. Kerfeld CA, Sawaya MR, Brahmandam V, Cascio D, Ho KK, Trevithick-Sutton CC, Krogmann DW, Yeates TO. PMID: 12517340.
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Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution. Protein Sci. 2002 Dec; 11(12):2887-93. Goulding CW, Parseghian A, Sawaya MR, Cascio D, Apostol MI, Gennaro ML, Eisenberg D. PMID: 12441386; PMCID: PMC2373750.
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Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallogr D Biol Crystallogr. 2002 Apr; 58(Pt 4):571-8. Wang S, Mura C, Sawaya MR, Cascio D, Eisenberg D. PMID: 11914479.
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An ancestral nuclear protein assembly: crystal structure of the Methanopyrus kandleri histone. Protein Sci. 2001 Oct; 10(10):2002-7. Fahrner RL, Cascio D, Lake JA, Slesarev A. PMID: 11567091; PMCID: PMC2374223.
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The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core. Proc Natl Acad Sci U S A. 2001 May 08; 98(10):5532-7. Mura C, Cascio D, Sawaya MR, Eisenberg DS. PMID: 11331747; PMCID: PMC33247.
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Crystal structures of spin labeled T4 lysozyme mutants: implications for the interpretation of EPR spectra in terms of structure. Biochemistry. 2000 Jul 25; 39(29):8396-405. Langen R, Oh KJ, Cascio D, Hubbell WL. PMID: 10913245.
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Monomeric structure of the human EphB2 sterile alpha motif domain. J Biol Chem. 1999 Dec 24; 274(52):37301-6. Thanos CD, Faham S, Goodwill KE, Cascio D, Phillips M, Bowie JU. PMID: 10601296.
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Centrosymmetric bilayers in the 0.75 A resolution structure of a designed alpha-helical peptide, D,L-Alpha-1. Protein Sci. 1999 Jul; 8(7):1410-22. Patterson WR, Anderson DH, DeGrado WF, Cascio D, Eisenberg D. PMID: 10422829; PMCID: PMC2144380.
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The 1.8 A crystal structure of the ycaC gene product from Escherichia coli reveals an octameric hydrolase of unknown specificity. Structure. 1998 Oct 15; 6(10):1329-37. Colovos C, Cascio D, Yeates TO. PMID: 9782055.
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NarL dimerization? Suggestive evidence from a new crystal form. Biochemistry. 1998 Mar 17; 37(11):3665-76. Baikalov I, Schröder I, Kaczor-Grzeskowiak M, Cascio D, Gunsalus RP, Dickerson RE. PMID: 9521685.
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Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis. J Mol Biol. 1997 Jun 27; 269(5):811-26. Han GW, Kopka ML, Cascio D, Grzeskowiak K, Dickerson RE. PMID: 9223643.
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Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity. Biochemistry. 1994 Nov 22; 33(46):13593-610. Kopka ML, Goodsell DS, Baikalov I, Grzeskowiak K, Cascio D, Dickerson RE. PMID: 7947769.
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Crystallization studies of the human immunodeficiency virus (HIV-1) Tat protein and its trans-activation response element (TAR) RNA. Acta Crystallogr D Biol Crystallogr. 1994 Jul 01; 50(Pt 4):527-34. McKenna MC, Anderson D, Cascio D, Eisenberg D. PMID: 15299414.
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Crystal structure of the unactivated ribulose 1,5-bisphosphate carboxylase/oxygenase complexed with a transition state analog, 2-carboxy-D-arabinitol 1,5-bisphosphate. Protein Sci. 1994 Jan; 3(1):64-9. Zhang KY, Cascio D, Eisenberg D. PMID: 8142899; PMCID: PMC2142487.
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Crystal structure of canine and bovine granulocyte-colony stimulating factor (G-CSF). J Mol Biol. 1993 Dec 05; 234(3):640-53. Lovejoy B, Cascio D, Eisenberg D. PMID: 7504736.
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Formation of the active site of ribulose-1,5-bisphosphate carboxylase/oxygenase by a disorder-order transition from the unactivated to the activated form. Proc Natl Acad Sci U S A. 1993 Nov 01; 90(21):9968-72. Schreuder HA, Knight S, Curmi PM, Andersson I, Cascio D, Brändén CI, Eisenberg D. PMID: 8234342; PMCID: PMC47694.
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The 1.5-A crystal structure of plastocyanin from the green alga Chlamydomonas reinhardtii. Biochemistry. 1993 Oct 12; 32(40):10560-7. Redinbo MR, Cascio D, Choukair MK, Rice D, Merchant S, Yeates TO. PMID: 8399201.
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Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA. Biochemistry. 1993 Aug 31; 32(34):8923-31. Grzeskowiak K, Goodsell DS, Kaczor-Grzeskowiak M, Cascio D, Dickerson RE. PMID: 8364037.
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Crystal structure of activated tobacco rubisco complexed with the reaction-intermediate analogue 2-carboxy-arabinitol 1,5-bisphosphate. Protein Sci. 1993 Jul; 2(7):1136-46. Schreuder HA, Knight S, Curmi PM, Andersson I, Cascio D, Sweet RM, Brändén CI, Eisenberg D. PMID: 8358296; PMCID: PMC2142417.
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Crystal structure of CATGGCCATG and its implications for A-tract bending models. Proc Natl Acad Sci U S A. 1993 Apr 01; 90(7):2930-4. Goodsell DS, Kopka ML, Cascio D, Dickerson RE. PMID: 8464909; PMCID: PMC46210.
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Crystal structure of a synthetic triple-stranded alpha-helical bundle. Science. 1993 Feb 26; 259(5099):1288-93. Lovejoy B, Choe S, Cascio D, McRorie DK, DeGrado WF, Eisenberg D. PMID: 8446897.
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Crystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase/oxygenase from tobacco refined at 2.0-A resolution. J Biol Chem. 1992 Aug 25; 267(24):16980-9. Curmi PM, Cascio D, Sweet RM, Eisenberg D, Schreuder H. PMID: 1512238.
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X-ray grade crystals of a designed alpha-helical coiled coil. Protein Sci. 1992 Jul; 1(7):956-7. Lovejoy B, Le TC, Lüthy R, Cascio D, O'Neil KT, DeGrado WF, Eisenberg D. PMID: 1304378; PMCID: PMC2142157.
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The structure of DAPI bound to DNA. J Biomol Struct Dyn. 1989 Dec; 7(3):477-91. Larsen TA, Goodsell DS, Cascio D, Grzeskowiak K, Dickerson RE. PMID: 2627296.
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Refined atomic model of glutamine synthetase at 3.5 A resolution. J Biol Chem. 1989 Oct 25; 264(30):17681-90. Yamashita MM, Almassy RJ, Janson CA, Cascio D, Eisenberg D. PMID: 2572586.
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Tertiary structure of plant RuBisCO: domains and their contacts. Science. 1988 Jul 01; 241(4861):71-4. Chapman MS, Suh SW, Curmi PM, Cascio D, Smith WW, Eisenberg DS. PMID: 3133767.
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A crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase from Nicotiana tabacum in the activated state. J Mol Biol. 1987 Sep 20; 197(2):363-5. Suh SW, Cascio D, Chapman MS, Eisenberg D. PMID: 3681999.
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Some evolutionary relationships of the primary biological catalysts glutamine synthetase and RuBisCO. Cold Spring Harb Symp Quant Biol. 1987; 52:483-90. Eisenberg D, Almassy RJ, Janson CA, Chapman MS, Suh SW, Cascio D, Smith WW. PMID: 2900091.
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