GeneNetwork
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Welcome!
Select and Search
______________________________________________________
Quick HELP Examples and
User's Guide
You can also use advanced commands. Copy these simple examples
into the
Get Any
or
Combined
search fields:
POSITION=(chr1 25 30)
finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb.
MEAN=(15 16) LRS=(23 46)
in the
Combined
field finds highly expressed genes (15 to 16 log2 units) AND with peak
LRS
linkage between 23 and 46.
RIF=mitochondrial
searches RNA databases for
GeneRIF
links.
WIKI=nicotine
searches
GeneWiki
for genes that you or other users have annotated with the word
nicotine
GO:0045202
searches for synapse-associated genes listed in the
Gene Ontology
NAME=(watson jd)
searches for all genes associated in PubMed with the author J D Watson.
GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
in
Combined
finds synapse-associated genes with
cis eQTL
on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
in
Combined
finds diabetes-associated transcripts with peak
trans eQTLs
on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.
Websites Affiliated with GeneNetwork
UTHSC Genome Browser
Classic
and
Newest
UTHSC
Bayesian Network Web Server
GeneNetwork Classic Code on
GitHub
GeneNetwork 2.0 Development Code on
GitHub
GeneNetwork 2.0
Development
____________________________
Getting Started
Select
Species
(or select All)
Select
Group
(a specific sample)
Select
Type
of data:
Phenotype (traits)
Genotype (markers)
Expression (mRNAs)
Select a
Database
Enter search terms in the
Get Any
or
Combined
field: words, genes, ID numbers, probes, advanced search commands
Click on the
button
Optional: Use the
Make Default
button to save your preferences
____________________________
How to Use GeneNetwork
Take a 20-40 minute GeneNetwork
Tour
that includes screen shots and typical steps in the analysis.
For information about resources and methods, select the
buttons.
Review the
Conditions
and
Contacts
pages for information on the status of data sets and advice on their use and citation.
Web services initiated January, 1994 as
Portable Dictionary of the Mouse Genome
; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork.
This site is currently operated by
Rob Williams
Pjotr Prins
Zachary Sloan
Arthur Centeno
. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams,
colleagues
GeneNetwork support from:
The UT Center for Integrative and Translational Genomics
NIGMS
Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
NIDA
NIDA Core Center of Excellence in Transcriptomics, Systems Genetics,
and the Addictome (P30 DA044223, 2017-2022)
NIA
Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
NIAAA
Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
NIDA
NIMH
, and
NIAAA
(P20-DA 21131, 2001-2012)
NCI MMHCC (U01CA105417), NCRR,
BIRN
, (U24 RR021760)
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