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Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant J. 2017 Aug; 91(3):361-370. Hsia MM, O'Malley R, Cartwright A, Nieu R, Gordon SP, Kelly S, Williams TG, Wood DF, Zhao Y, Bragg J, Jordan M, Pauly M, Ecker JR, Gu Y, Vogel JP. PMID: 28432803.
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Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain. Proc Natl Acad Sci U S A. 2017 04 04; 114(14):E2882-E2890. Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel EA. PMID: 28320934; PMCID: PMC5389278.
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Improved regulatory element prediction based on tissue-specific local epigenomic signatures. Proc Natl Acad Sci U S A. 2017 02 28; 114(9):E1633-E1640. He Y, Gorkin DU, Dickel DE, Nery JR, Castanon RG, Lee AY, Shen Y, Visel A, Pennacchio LA, Ren B, Ecker JR. PMID: 28193886; PMCID: PMC5338528.
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Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation. Plant J. 2017 Feb; 89(4):805-824. Narsai R, Secco D, Schultz MD, Ecker JR, Lister R, Whelan J. PMID: 27859855.
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Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. New Phytol. 2017 Apr; 214(2):808-819. Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. PMID: 28106918.
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Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Curr Biol. 2017 Feb 06; 27(3):437-444. Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M. PMID: 28111153; PMCID: PMC5296222.
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JAZ2 controls stomata dynamics during bacterial invasion. New Phytol. 2017 Feb; 213(3):1378-1392. Gimenez-Ibanez S, Boter M, Ortigosa A, García-Casado G, Chini A, Lewsey MG, Ecker JR, Ntoukakis V, Solano R. PMID: 28005270.
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Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain. Cell Rep. 2016 12 20; 17(12):3369-3384. Luo C, Lancaster MA, Castanon R, Nery JR, Knoblich JA, Ecker JR. PMID: 28009303; PMCID: PMC5495578.
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Functional Human Oocytes Generated by Transfer of Polar Body Genomes. Cell Stem Cell. 2017 01 05; 20(1):112-119. Ma H, O'Neil RC, Marti Gutierrez N, Hariharan M, Zhang ZZ, He Y, Cinnioglu C, Kayali R, Kang E, Lee Y, Hayama T, Koski A, Nery J, Castanon R, Tippner-Hedges R, Ahmed R, Van Dyken C, Li Y, Olson S, Battaglia D, Lee DM, Wu DH, Amato P, Wolf DP, Ecker JR, Mitalipov S. PMID: 27840020; PMCID: PMC5218919.
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A transcription factor hierarchy defines an environmental stress response network. Science. 2016 11 04; 354(6312). Song L, Huang SC, Wise A, Castanon R, Nery JR, Chen H, Watanabe M, Thomas J, Bar-Joseph Z, Ecker JR. PMID: 27811239; PMCID: PMC5217750.
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Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods. 2016 Dec; 13(12):1050-1054. Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, Rank DR, Schatz MC. PMID: 27749838; PMCID: PMC5503144.
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EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Nat Commun. 2016 10 03; 7:13018. Zhang F, Qi B, Wang L, Zhao B, Rode S, Riggan ND, Ecker JR, Qiao H. PMID: 27694846; PMCID: PMC5063967.
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Integration of omic networks in a developmental atlas of maize. Science. 2016 Aug 19; 353(6301):814-8. Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. PMID: 27540173; PMCID: PMC5808982.
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Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 2016 Jul 14; 166(2):492-505. Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, Becker C, O'Neil R, O'Malley RC, Quarless DX, 1001 Genomes Consortium, Schork NJ, Weigel D, Nordborg M, Ecker JR. PMID: 27419873; PMCID: PMC5172462.
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Molecular Criteria for Defining the Naive Human Pluripotent State. Cell Stem Cell. 2016 10 06; 19(4):502-515. Theunissen TW, Friedli M, He Y, Planet E, O'Neil RC, Markoulaki S, Pontis J, Wang H, Iouranova A, Imbeault M, Duc J, Cohen MA, Wert KJ, Castanon R, Zhang Z, Huang Y, Nery JR, Drotar J, Lungjangwa T, Trono D, Ecker JR, Jaenisch R. PMID: 27424783; PMCID: PMC5065525.
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An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling. Sci Rep. 2016 06 30; 6:28941. Aleman F, Yazaki J, Lee M, Takahashi Y, Kim AY, Li Z, Kinoshita T, Ecker JR, Schroeder JI. PMID: 27357749; PMCID: PMC4928087.
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Mapping transcription factor interactome networks using HaloTag protein arrays. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):E4238-47. Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SS, Chen H, Ramachandran N, Altmann S, Gutiérrez RA, Hill DE, Schroeder JI, Chory J, LaBaer J, Vidal M, Braun P, Ecker JR. PMID: 27357687; PMCID: PMC4961138.
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Profiling of transcription factor binding events by chromatin immunoprecipitation sequencing (ChIP-seq). Curr Protoc Plant Biol. 2016; 1(2):293-306. Song L, Koga Y, Ecker JR. PMID: 28782043; PMCID: PMC5544034.
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Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. 2016 May 19; 165(5):1280-1292. O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. PMID: 27203113; PMCID: PMC4907330.
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The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram. G3 (Bethesda). 2016 05 03; 6(5):1383-90. Prigge MJ, Greenham K, Zhang Y, Santner A, Castillejo C, Mutka AM, O'Malley RC, Ecker JR, Kunkel BN, Estelle M. PMID: 26976444; PMCID: PMC4856089.
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Unique cell-type-specific patterns of DNA methylation in the root meristem. Nat Plants. 2016 04 29; 2(5):16058. Kawakatsu T, Stuart T, Valdes M, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN, Ecker JR. PMID: 27243651; PMCID: PMC4855458.
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A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants. Plant Cell. 2016 Mar; 28(3):606-9. Bergelson J, Buckler ES, Ecker JR, Nordborg M, Weigel D. PMID: 26956491; PMCID: PMC4826003.
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Epigenomic landscapes of retinal rods and cones. Elife. 2016 Mar 07; 5:e11613. Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. PMID: 26949250; PMCID: PMC4798964.
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Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nat Genet. 2016 Apr; 48(4):417-26. Bogdanovic O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R. PMID: 26928226; PMCID: PMC5912259.
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Mobile small RNAs regulate genome-wide DNA methylation. Proc Natl Acad Sci U S A. 2016 Feb 09; 113(6):E801-10. Lewsey MG, Hardcastle TJ, Melnyk CW, Molnar A, Valli A, Urich MA, Nery JR, Baulcombe DC, Ecker JR. PMID: 26787884; PMCID: PMC4760824.
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Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns. Transl Psychiatry. 2016 Jan 19; 6:e718. Sanchez-Mut JV, Heyn H, Vidal E, Moran S, Sayols S, Delgado-Morales R, Schultz MD, Ansoleaga B, Garcia-Esparcia P, Pons-Espinal M, de Lagran MM, Dopazo J, Rabano A, Avila J, Dierssen M, Lott I, Ferrer I, Ecker JR, Esteller M. PMID: 26784972; PMCID: PMC5068885.
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Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell. 2016 Jan 14; 164(1-2):233-245. Pedmale UV, Huang SC, Zander M, Cole BJ, Hetzel J, Ljung K, Reis PAB, Sridevi P, Nito K, Nery JR, Ecker JR, Chory J. PMID: 26724867; PMCID: PMC4721562.
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Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 2016 Feb 11; 530(7589):242. Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. PMID: 26605523.
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Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. PLoS Genet. 2015 Sep; 11(9):e1005452. Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. PMID: 26379054; PMCID: PMC4574932.
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Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Aug 25; 112(34):E4802-10. Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. PMID: 26261339; PMCID: PMC4553765.
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Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements. Elife. 2015 Jul 21; 4. Secco D, Wang C, Shou H, Schultz MD, Chiarenza S, Nussaume L, Ecker JR, Whelan J, Lister R. PMID: 26196146; PMCID: PMC4534844.
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Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 2015 Jun 17; 86(6):1369-84. Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. PMID: 26087164; PMCID: PMC4499463.
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An alternative pluripotent state confers interspecies chimaeric competency. Nature. 2015 May 21; 521(7552):316-21. Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, Takahashi Y, Aizawa E, Kim NY, Lajara J, Guillen P, Campistol JM, Esteban CR, Ross PJ, Saghatelian A, Ren B, Ecker JR, Izpisua Belmonte JC. PMID: 25945737; PMCID: PMC5278765.
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ERRs Mediate a Metabolic Switch Required for Somatic Cell Reprogramming to Pluripotency. Cell Stem Cell. 2015 May 07; 16(5):547-55. Kida YS, Kawamura T, Wei Z, Sogo T, Jacinto S, Shigeno A, Kushige H, Yoshihara E, Liddle C, Ecker JR, Yu RT, Atkins AR, Downes M, Evans RM. PMID: 25865501; PMCID: PMC4427539.
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A user's guide to the Arabidopsis T-DNA insertion mutant collections. Methods Mol Biol. 2015; 1284:323-42. O'Malley RC, Barragan CC, Ecker JR. PMID: 25757780; PMCID: PMC5215775.
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Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11; 158(6):1431-1443. Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJM, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR. PMID: 25215497; PMCID: PMC4163041.
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Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life. Cell Host Microbe. 2014 Sep 10; 16(3):364-75. Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P. PMID: 25211078; PMCID: PMC4191710.
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The developmental potential of iPSCs is greatly influenced by reprogramming factor selection. Cell Stem Cell. 2014 Sep 04; 15(3):295-309. Buganim Y, Markoulaki S, van Wietmarschen N, Hoke H, Wu T, Ganz K, Akhtar-Zaidi B, He Y, Abraham BJ, Porubsky D, Kulenkampff E, Faddah DA, Shi L, Gao Q, Sarkar S, Cohen M, Goldmann J, Nery JR, Schultz MD, Ecker JR, Xiao A, Young RA, Lansdorp PM, Jaenisch R. PMID: 25192464; PMCID: PMC4170792.
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Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways. Genome Res. 2014 Oct; 24(10):1613-23. Yu W, McIntosh C, Lister R, Zhu I, Han Y, Ren J, Landsman D, Lee E, Briones V, Terashima M, Leighty R, Ecker JR, Muegge K. PMID: 25170028; PMCID: PMC4199375.
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The Arabidopsis 14-3-3 protein RARE COLD INDUCIBLE 1A links low-temperature response and ethylene biosynthesis to regulate freezing tolerance and cold acclimation. Plant Cell. 2014 Aug; 26(8):3326-42. Catalá R, López-Cobollo R, Mar Castellano M, Angosto T, Alonso JM, Ecker JR, Salinas J. PMID: 25122152; PMCID: PMC4371832.
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Abnormalities in human pluripotent cells due to reprogramming mechanisms. Nature. 2014 Jul 10; 511(7508):177-83. Ma H, Morey R, O'Neil RC, He Y, Daughtry B, Schultz MD, Hariharan M, Nery JR, Castanon R, Sabatini K, Thiagarajan RD, Tachibana M, Kang E, Tippner-Hedges R, Ahmed R, Gutierrez NM, Van Dyken C, Polat A, Sugawara A, Sparman M, Gokhale S, Amato P, Wolf DP, Ecker JR, Laurent LC, Mitalipov S. PMID: 25008523; PMCID: PMC4898064.
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CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity. Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16):5890-5. Yu W, Briones V, Lister R, McIntosh C, Han Y, Lee EY, Ren J, Terashima M, Leighty RM, Ecker JR, Muegge K. PMID: 24711395; PMCID: PMC4000807.
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Supraretinacular endoscopic carpal tunnel release: surgical technique with prospective case series. J Hand Surg Eur Vol. 2015 Feb; 40(2):193-8. Ecker J, Perera N, Ebert J. PMID: 24570345.
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Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis. Proc Natl Acad Sci U S A. 2013 Oct 15; 110(42):16927-32. Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. PMID: 24082131; PMCID: PMC3801079.
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Arabidopsis basic helix-loop-helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior. Plant Cell. 2013 Aug; 25(8):3117-32. Schweizer F, Fernández-Calvo P, Zander M, Diez-Diaz M, Fonseca S, Glauser G, Lewsey MG, Ecker JR, Solano R, Reymond P. PMID: 23943862; PMCID: PMC3784603.
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Global epigenomic reconfiguration during mammalian brain development. Science. 2013 Aug 09; 341(6146):1237905. Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR. PMID: 23828890; PMCID: PMC3785061.
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Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res. 2013 Oct; 23(10):1663-74. Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR. PMID: 23739894; PMCID: PMC3787263.
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Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2". Plant Signal Behav. 2013 Aug; 8(8). Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. PMID: 23733051; PMCID: PMC3999072.
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Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab. 2012 Dec 05; 16(6):833-45. Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S. PMID: 23217262; PMCID: PMC3541940.
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A blueprint for an international cancer epigenome consortium. A report from the AACR Cancer Epigenome Task Force. Cancer Res. 2012 Dec 15; 72(24):6319-24. Beck S, Bernstein BE, Campbell RM, Costello JF, Dhanak D, Ecker JR, Greally JM, Issa JP, Laird PW, Polyak K, Tycko B, Jones PA, AACR Cancer Epigenome Task Force. PMID: 23188507.
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Sigma factor-mediated plastid retrograde signals control nuclear gene expression. Plant J. 2013 Jan; 73(1):1-13. Woodson JD, Perez-Ruiz JM, Schmitz RJ, Ecker JR, Chory J. PMID: 22950756; PMCID: PMC3605210.
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'Leveling' the playing field for analyses of single-base resolution DNA methylomes. Trends Genet. 2012 Dec; 28(12):583-5. Schultz MD, Schmitz RJ, Ecker JR. PMID: 23131467; PMCID: PMC3523709.
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Genomics: ENCODE explained. Nature. 2012 Sep 06; 489(7414):52-5. Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E. PMID: 22955614.
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Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science. 2012 Oct 19; 338(6105):390-3. Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. PMID: 22936567; PMCID: PMC3523706.
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Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. Genes Dev. 2012 Aug 15; 26(16):1825-36. Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, Gregory BD, Ecker JR, Tang H, Pikaard CS. PMID: 22855789; PMCID: PMC3426761.
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Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci U S A. 2012 Aug 07; 109(32):E2183-91. Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR. PMID: 22733782; PMCID: PMC3420206.
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Detection of allele-specific methylation through a generalized heterogeneous epigenome model. Bioinformatics. 2012 Jun 15; 28(12):i163-71. Peng Q, Ecker JR. PMID: 22689757; PMCID: PMC3371863.
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Release factor one is nonessential in Escherichia coli. ACS Chem Biol. 2012 Aug 17; 7(8):1337-44. Johnson DB, Wang C, Xu J, Schultz MD, Schmitz RJ, Ecker JR, Wang L. PMID: 22662873; PMCID: PMC3423824.
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Linking photoreceptor excitation to changes in plant architecture. Genes Dev. 2012 Apr 15; 26(8):785-90. Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. PMID: 22508725; PMCID: PMC3337452.
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Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis. G3 (Bethesda). 2012 Apr; 2(4):487-98. Kurihara Y, Schmitz RJ, Nery JR, Schultz MD, Okubo-Kurihara E, Morosawa T, Tanaka M, Toyoda T, Seki M, Ecker JR. PMID: 22540040; PMCID: PMC3337477.
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Epigenetic and epigenomic variation in Arabidopsis thaliana. Trends Plant Sci. 2012 Mar; 17(3):149-54. Schmitz RJ, Ecker JR. PMID: 22342533; PMCID: PMC3645451.
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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res. 2012 Feb; 22(2):246-58. Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, Simpson AJ, Ren B. PMID: 22156296; PMCID: PMC3266032.
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Forward and reverse genetics through derivation of haploid mouse embryonic stem cells. Cell Stem Cell. 2011 Dec 02; 9(6):563-74. Elling U, Taubenschmid J, Wirnsberger G, O'Malley R, Demers SP, Vanhaelen Q, Shukalyuk AI, Schmauss G, Schramek D, Schnuetgen F, von Melchner H, Ecker JR, Stanford WL, Zuber J, Stark A, Penninger JM. PMID: 22136931; PMCID: PMC4008724.
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Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome. G3 (Bethesda). 2011 Dec; 1(7):559-70. Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB. PMID: 22384367; PMCID: PMC3276175.
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RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nat Chem Biol. 2011 Sep 18; 7(11):779-86. Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L. PMID: 21926996; PMCID: PMC3201715.
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Transgenerational epigenetic instability is a source of novel methylation variants. Science. 2011 Oct 21; 334(6054):369-73. Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR. PMID: 21921155; PMCID: PMC3210014.
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Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science. 2011 Jul 29; 333(6042):596-601. Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, Poulin MM, Gebreab F, Gutierrez BJ, Tam S, Monachello D, Boxem M, Harbort CJ, McDonald N, Gai L, Chen H, He Y, European Union Effectoromics Consortium, Vandenhaute J, Roth FP, Hill DE, Ecker JR, Vidal M, Beynon J, Braun P, Dangl JL. PMID: 21798943; PMCID: PMC3170753.
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Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature. 2011 May 19; 473(7347):394-7. Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A. PMID: 21552279; PMCID: PMC3124347.
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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 2011 Mar 03; 471(7336):68-73. Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, Evans RM, Ecker JR. PMID: 21289626; PMCID: PMC3100360.
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The NIH Roadmap Epigenomics Mapping Consortium. Nat Biotechnol. 2010 Oct; 28(10):1045-8. Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MA, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA. PMID: 20944595; PMCID: PMC3607281.
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat Biotechnol. 2010 Oct; 28(10):1097-105. Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF. PMID: 20852635; PMCID: PMC2955169.
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Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proc Natl Acad Sci U S A. 2010 Aug 10; 107(32):14502-7. Boutrot F, Segonzac C, Chang KN, Qiao H, Ecker JR, Zipfel C, Rathjen JP. PMID: 20663954; PMCID: PMC2922558.
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Ethylene-induced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in Arabidopsis. Plant Cell. 2010 Jul; 22(7):2384-401. An F, Zhao Q, Ji Y, Li W, Jiang Z, Yu X, Zhang C, Han Y, He W, Liu Y, Zhang S, Ecker JR, Guo H. PMID: 20647342; PMCID: PMC2929093.
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Zeroing in on DNA methylomes with no BS. Nat Methods. 2010 Jun; 7(6):435-7. Ecker JR. PMID: 20508637.
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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell. 2010 May 07; 6(5):479-91. Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, Ruotti V, Wang W, Stewart R, Thomson JA, Ecker JR, Ren B. PMID: 20452322; PMCID: PMC2867844.
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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 03; 465(7298):627-31. Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. PMID: 20336072; PMCID: PMC3023908.
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Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J. 2010 Mar; 61(6):928-40. O'Malley RC, Ecker JR. PMID: 20409268.
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Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing. PLoS Pathog. 2010 Jan 15; 6(1):e1000729. Endres MW, Gregory BD, Gao Z, Foreman AW, Mlotshwa S, Ge X, Pruss GJ, Ecker JR, Bowman LH, Vance V. PMID: 20084269; PMCID: PMC2800190.
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The biceps brachii muscle and its distal insertion: observations of surgical and evolutionary relevance. Surg Radiol Anat. 2010 Apr; 32(4):371-5. Cucca YY, McLay SV, Okamoto T, Ecker J, McMenamin PG. PMID: 19847376.
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Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 2009 Nov 19; 462(7271):315-22. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR. PMID: 19829295; PMCID: PMC2857523.
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A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics. 2009 Nov; 183(3):979-1003. Tsuchisaka A, Yu G, Jin H, Alonso JM, Ecker JR, Zhang X, Gao S, Theologis A. PMID: 19752216; PMCID: PMC2778992.
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Prepublication data sharing. Nature. 2009 Sep 10; 461(7261):168-70. Toronto International Data Release Workshop Authors, Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, Cambon-Thomsen A, Carter NP, Chisholm RL, Contreras JL, Cooke RM, Crosby WL, Dewar K, Durbin R, Dyke SO, Ecker JR, El Emam K, Feuk L, Gabriel SB, Gallacher J, Gelbart WM, Granell A, Guarner F, Hubbard T, Jackson SA, Jennings JL, Joly Y, Jones SM, Kaye J, Kennedy KL, Knoppers BM, Kyrpides NC, Lowrance WW, Luo J, MacKay JJ, Martín-Rivera L, McCombie WR, McPherson JD, Miller L, Miller W, Moerman D, Mooser V, Morton CC, Ostell JM, Ouellette BF, Parkhill J, Raina PS, Rawlings C, Scherer SE, Scherer SW, Schofield PN, Sensen CW, Stodden VC, Sussman MR, Tanaka T, Thornton J, Tsunoda T, Valle D, Vuorio EI, Walker NM, Wallace S, Weinstock G, Whitman WB, Worley KC, Wu C, Wu J, Yu J. PMID: 19741685; PMCID: PMC3073843.
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Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development. 2009 Jun; 136(11):1909-18. Liljegren SJ, Leslie ME, Darnielle L, Lewis MW, Taylor SM, Luo R, Geldner N, Chory J, Randazzo PA, Yanofsky MF, Ecker JR. PMID: 19429787; PMCID: PMC2680113.
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A family of bacterial cysteine protease type III effectors utilizes acylation-dependent and -independent strategies to localize to plasma membranes. J Biol Chem. 2009 Jun 05; 284(23):15867-79. Dowen RH, Engel JL, Shao F, Ecker JR, Dixon JE. PMID: 19346252; PMCID: PMC2708883.
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Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res. 2009 Jun; 19(6):959-66. Lister R, Ecker JR. PMID: 19273618; PMCID: PMC3807530.
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Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer. Proteomics. 2009 Mar; 9(6):1646-61. Li H, Wong WS, Zhu L, Guo HW, Ecker J, Li N. PMID: 19253305.
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Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol. 2009 Feb 11; 10(2):R17. Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. PMID: 19210792; PMCID: PMC2688271.
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Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev. 2009 Feb 15; 23(4):512-21. Qiao H, Chang KN, Yazaki J, Ecker JR. PMID: 19196655; PMCID: PMC2648649.
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Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Curr Opin Plant Biol. 2009 Apr; 12(2):107-18. Lister R, Gregory BD, Ecker JR. PMID: 19157957; PMCID: PMC2723731.
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Literature-curated protein interaction datasets. Nat Methods. 2009 Jan; 6(1):39-46. Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, Roth FP, Vidal M. PMID: 19116613; PMCID: PMC2683745.
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2020 vision for biology: the role of plants in addressing grand challenges in biology. Mol Plant. 2008 Jul; 1(4):561-3. Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, Poethig S, Raikhel N, Schmitt J, Schnittger A, Vidal M. PMID: 19825561.
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A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell. 2008 Jun; 14(6):854-66. Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR. PMID: 18486559.
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Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell. 2008 May 02; 133(3):523-36. Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. PMID: 18423832; PMCID: PMC2723732.
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Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. Plant Cell. 2008 Feb; 20(2):320-36. Hu J, Mitchum MG, Barnaby N, Ayele BT, Ogawa M, Nam E, Lai WC, Hanada A, Alonso JM, Ecker JR, Swain SM, Yamaguchi S, Kamiya Y, Sun TP. PMID: 18310462; PMCID: PMC2276448.
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The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell. 2008 Feb; 20(2):337-52. Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH. PMID: 18252845; PMCID: PMC2276449.
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Utilizing tiling microarrays for whole-genome analysis in plants. Plant J. 2008 Feb; 53(4):636-44. Gregory BD, Yazaki J, Ecker JR. PMID: 18269573.
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Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell. 2007 Dec 28; 131(7):1340-53. Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA. PMID: 18160042.
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Mapping the genome landscape using tiling array technology. Curr Opin Plant Biol. 2007 Oct; 10(5):534-42. Yazaki J, Gregory BD, Ecker JR. PMID: 17703988; PMCID: PMC2665186.
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A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis. Plant Cell. 2007 Aug; 19(8):2403-16. Li H, He Z, Lu G, Lee SC, Alonso J, Ecker JR, Luan S. PMID: 17704213; PMCID: PMC2002612.
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Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet. 2007 Sep; 39(9):1151-5. Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M. PMID: 17676040.
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The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease. J Cell Biol. 2007 Jul 30; 178(3):477-88. Gentry MS, Dowen RH, Worby CA, Mattoo S, Ecker JR, Dixon JE. PMID: 17646401; PMCID: PMC2064834.
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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science. 2007 Jul 20; 317(5836):338-42. Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D. PMID: 17641193.
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Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2007 Jul 17; 104(29):12057-62. Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. PMID: 17626786; PMCID: PMC1914337.
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Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC. Proc Natl Acad Sci U S A. 2007 Feb 27; 104(9):3633-8. Swiezewski S, Crevillen P, Liu F, Ecker JR, Jerzmanowski A, Dean C. PMID: 17360694; PMCID: PMC1805594.
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Higher plants possess two different types of ATX1-like copper chaperones. Biochem Biophys Res Commun. 2007 Mar 09; 354(2):385-90. Puig S, Mira H, Dorcey E, Sancenón V, Andrés-Colás N, Garcia-Molina A, Burkhead JL, Gogolin KA, Abdel-Ghany SE, Thiele DJ, Ecker JR, Pilon M, Peñarrubia L. PMID: 17223078.
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An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nat Protoc. 2007; 2(11):2910-7. O'Malley RC, Alonso JM, Kim CJ, Leisse TJ, Ecker JR. PMID: 18007627.
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The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. Plant Cell. 2006 Nov; 18(11):3058-72. Chilley PM, Casson SA, Tarkowski P, Hawkins N, Wang KL, Hussey PJ, Beale M, Ecker JR, Sandberg GK, Lindsey K. PMID: 17138700; PMCID: PMC1693943.
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The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. Plant Cell. 2006 Nov; 18(11):3073-87. Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. PMID: 17122069; PMCID: PMC1693944.
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Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science. 2006 Nov 24; 314(5803):1295-8. Kim SA, Punshon T, Lanzirotti A, Li L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML. PMID: 17082420.
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CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. PLoS Biol. 2006 Oct; 4(10):e327. Mori IC, Murata Y, Yang Y, Munemasa S, Wang YF, Andreoli S, Tiriac H, Alonso JM, Harper JF, Ecker JR, Kwak JM, Schroeder JI. PMID: 17032064; PMCID: PMC1592316.
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Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
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ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2. Proc Natl Acad Sci U S A. 2006 Sep 05; 103(36):13286-93. Olmedo G, Guo H, Gregory BD, Nourizadeh SD, Aguilar-Henonin L, Li H, An F, Guzman P, Ecker JR. PMID: 16920797; PMCID: PMC1550774.
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The ACC synthase TOE sequence is required for interaction with ETO1 family proteins and destabilization of target proteins. Plant Mol Biol. 2006 Oct; 62(3):427-37. Yoshida H, Wang KL, Chang CM, Mori K, Uchida E, Ecker JR. PMID: 16897471.
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RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. J Exp Bot. 2006; 57(11):2697-708. Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. PMID: 16829549.
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Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS Pathog. 2006 Jun; 2(6):e60. Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S, Berry CC, Ecker JR, Bushman FD. PMID: 16789841; PMCID: PMC1480600.
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PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proc Natl Acad Sci U S A. 2006 Jun 27; 103(26):10134-9. Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C. PMID: 16777956; PMCID: PMC1502518.
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Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. Plant Cell. 2006 Jul; 18(7):1704-21. Rudella A, Friso G, Alonso JM, Ecker JR, van Wijk KJ. PMID: 16766689; PMCID: PMC1488914.
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Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nat Rev Genet. 2006 Jul; 7(7):524-36. Alonso JM, Ecker JR. PMID: 16755288.
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HIV integration site selection: targeting in macrophages and the effects of different routes of viral entry. Mol Ther. 2006 Aug; 14(2):218-25. Barr SD, Ciuffi A, Leipzig J, Shinn P, Ecker JR, Bushman FD. PMID: 16647883.
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The Arabidopsis heavy metal P-type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots. Plant J. 2006 Jan; 45(2):225-36. Andrés-Colás N, Sancenón V, Rodríguez-Navarro S, Mayo S, Thiele DJ, Ecker JR, Puig S, Peñarrubia L. PMID: 16367966.
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Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts. Mol Ther. 2006 Feb; 13(2):366-73. Ciuffi A, Mitchell RS, Hoffmann C, Leipzig J, Shinn P, Ecker JR, Bushman FD. PMID: 16325473.
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A role for LEDGF/p75 in targeting HIV DNA integration. Nat Med. 2005 Dec; 11(12):1287-9. Ciuffi A, Llano M, Poeschla E, Hoffmann C, Leipzig J, Shinn P, Ecker JR, Bushman F. PMID: 16311605.
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Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. Plant Cell. 2005 Dec; 17(12):3282-300. Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, Smith A, Yu G, Theologis A. PMID: 16284307; PMCID: PMC1315369.
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Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. Plant Cell. 2005 Nov; 17(11):3007-18. Mason MG, Mathews DE, Argyros DA, Maxwell BB, Kieber JJ, Alonso JM, Ecker JR, Schaller GE. PMID: 16227453; PMCID: PMC1276026.
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Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development. 2005 Sep; 132(18):4107-18. Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW. PMID: 16107481.
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Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. J Virol. 2005 Jun; 79(11):6610-9. Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD. PMID: 15890899; PMCID: PMC1112149.
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FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 2005 Jul; 170(3):1197-207. Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. PMID: 15911588; PMCID: PMC1451178.
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Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol. 2005 Jun; 138(2):990-7. Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. PMID: 15908595; PMCID: PMC1150413.
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Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc Natl Acad Sci U S A. 2005 Mar 22; 102(12):4459-64. Zhang X, Odom DT, Koo SH, Conkright MD, Canettieri G, Best J, Chen H, Jenner R, Herbolsheimer E, Jacobsen E, Kadam S, Ecker JR, Emerson B, Hogenesch JB, Unterman T, Young RA, Montminy M. PMID: 15753290; PMCID: PMC555478.
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Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell. 2005 Feb 11; 120(3):395-406. Ryu JS, Kim JI, Kunkel T, Kim BC, Cho DS, Hong SH, Kim SH, Fernández AP, Kim Y, Alonso JM, Ecker JR, Nagy F, Lim PO, Song PS, Schäfer E, Nam HG. PMID: 15707897.
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Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7):2460-5. Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. PMID: 15695584; PMCID: PMC548991.
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Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell. 2005 Feb; 17(2):444-63. Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A. PMID: 15659631; PMCID: PMC548818.
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Applications of DNA tiling arrays for whole-genome analysis. Genomics. 2005 Jan; 85(1):1-15. Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. PMID: 15607417.
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An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. Plant J. 2005 Jan; 41(2):304-18. Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. PMID: 15634206.
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The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46):16091-8. Monte E, Tepperman JM, Al-Sady B, Kaczorowski KA, Alonso JM, Ecker JR, Li X, Zhang Y, Quail PH. PMID: 15505214; PMCID: PMC528976.
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The central role of PhEIN2 in ethylene responses throughout plant development in petunia. Plant Physiol. 2004 Oct; 136(2):2900-12. Shibuya K, Barry KG, Ciardi JA, Loucas HM, Underwood BA, Nourizadeh S, Ecker JR, Klee HJ, Clark DG. PMID: 15466231; PMCID: PMC523352.
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Short-term growth responses to ethylene in Arabidopsis seedlings are EIN3/EIL1 independent. Plant Physiol. 2004 Oct; 136(2):2921-7. Binder BM, Mortimore LA, Stepanova AN, Ecker JR, Bleecker AB. PMID: 15466219; PMCID: PMC523354.
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Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34):12759-64. Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. PMID: 15310842; PMCID: PMC515126.
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Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev Cell. 2004 Aug; 7(2):193-204. Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR. PMID: 15296716.
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GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiol. 2004 Jun; 135(2):907-15. Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. PMID: 15181210; PMCID: PMC514125.
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Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics. 2004 Jun; 167(2):907-17. Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. PMID: 15238539; PMCID: PMC1470895.
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Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana. Mol Plant Microbe Interact. 2004 Jun; 17(6):696-706. Pfund C, Tans-Kersten J, Dunning FM, Alonso JM, Ecker JR, Allen C, Bent AF. PMID: 15195952.
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Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiol. 2004 Jun; 135(2):1008-19. Tyler L, Thomas SG, Hu J, Dill A, Alonso JM, Ecker JR, Sun TP. PMID: 15173565; PMCID: PMC514135.
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A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. J Biol Chem. 2004 Jul 30; 279(31):32474-82. Page ML, Hamel PP, Gabilly ST, Zegzouti H, Perea JV, Alonso JM, Ecker JR, Theg SM, Christensen SK, Merchant S. PMID: 15159384.
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Regulation of ethylene gas biosynthesis by the Arabidopsis ETO1 protein. Nature. 2004 Apr 29; 428(6986):945-50. Wang KL, Yoshida H, Lurin C, Ecker JR. PMID: 15118728.
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CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proc Natl Acad Sci U S A. 2004 Mar 16; 101(11):3985-90. Novillo F, Alonso JM, Ecker JR, Salinas J. PMID: 15004278; PMCID: PMC374356.
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Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell. 2004 Mar; 16(3):658-71. To JP, Haberer G, Ferreira FJ, Deruère J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. PMID: 14973166; PMCID: PMC385279.
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The ethylene signaling pathway: new insights. Curr Opin Plant Biol. 2004 Feb; 7(1):40-9. Guo H, Ecker JR. PMID: 14732440.
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Plant genomics: the third wave. Annu Rev Genomics Hum Genet. 2004; 5:443-77. Borevitz JO, Ecker JR. PMID: 15485356.
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Plant responses to ethylene gas are mediated by SCF(EBF1/EBF2)-dependent proteolysis of EIN3 transcription factor. Cell. 2003 Dec 12; 115(6):667-77. Guo H, Ecker JR. PMID: 14675532.
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Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. Plant Cell. 2003 Dec; 15(12):2940-51. Catala R, Santos E, Alonso JM, Ecker JR, Martinez-Zapater JM, Salinas J. PMID: 14630965; PMCID: PMC282833.
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A growth regulatory loop that provides homeostasis to phytochrome a signaling. Plant Cell. 2003 Dec; 15(12):2966-78. Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C. PMID: 14615593; PMCID: PMC282841.
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Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science. 2003 Nov 07; 302(5647):1049-53. Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. PMID: 14605371.
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Empirical analysis of transcriptional activity in the Arabidopsis genome. Science. 2003 Oct 31; 302(5646):842-6. Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, Sakano H, Wu T, Yu G, Miranda M, Quach HL, Tripp M, Chang CH, Lee JM, Toriumi M, Chan MM, Tang CC, Onodera CS, Deng JM, Akiyama K, Ansari Y, Arakawa T, Banh J, Banno F, Bowser L, Brooks S, Carninci P, Chao Q, Choy N, Enju A, Goldsmith AD, Gurjal M, Hansen NF, Hayashizaki Y, Johnson-Hopson C, Hsuan VW, Iida K, Karnes M, Khan S, Koesema E, Ishida J, Jiang PX, Jones T, Kawai J, Kamiya A, Meyers C, Nakajima M, Narusaka M, Seki M, Sakurai T, Satou M, Tamse R, Vaysberg M, Wallender EK, Wong C, Yamamura Y, Yuan S, Shinozaki K, Davis RW, Theologis A, Ecker JR. PMID: 14593172.
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Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell. 2003 Sep; 15(9):1962-80. Monte E, Alonso JM, Ecker JR, Zhang Y, Li X, Young J, Austin-Phillips S, Quail PH. PMID: 12953104; PMCID: PMC181324.
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Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science. 2003 Aug 01; 301(5633):653-7. Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR. PMID: 12893945.
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A reevaluation of the role of the heterotrimeric G protein in coupling light responses in Arabidopsis. Plant Physiol. 2003 Apr; 131(4):1623-7. Jones AM, Ecker JR, Chen JG. PMID: 12692321; PMCID: PMC166918.
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Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proc Natl Acad Sci U S A. 2003 Mar 04; 100(5):2992-7. Alonso JM, Stepanova AN, Solano R, Wisman E, Ferrari S, Ausubel FM, Ecker JR. PMID: 12606727; PMCID: PMC151454.
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GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science. 2003 Feb 07; 299(5608):902-6. Larkin RM, Alonso JM, Ecker JR, Chory J. PMID: 12574634.
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Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell. 2003 Feb 07; 112(3):379-89. Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL. PMID: 12581527.
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The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. Plant Cell. 2003 Feb; 15(2):393-409. Ullah H, Chen JG, Temple B, Boyes DC, Alonso JM, Davis KR, Ecker JR, Jones AM. PMID: 12566580; PMCID: PMC141209.
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Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. Nature. 2003 Jan 02; 421(6918):79-83. Strand A, Asami T, Alonso J, Ecker JR, Chory J. PMID: 12511958.
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Divergent perspectives on GM food. Nat Biotechnol. 2002 Dec; 20(12):1195-6; author reply 1197. Beachy R, Bennetzen JL, Chassy BM, Chrispeels M, Chory J, Ecker JR, Noel JP, Kay SA, Dean C, Lamb C, Jones J, Santerre CR, Schroeder JI, Umen J, Yanofsky M, Wessler S, Zhao Y, Parrott W. PMID: 12454665.
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ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis. Plant Cell Physiol. 2002 Dec; 43(12):1473-83. Yoshida R, Hobo T, Ichimura K, Mizoguchi T, Takahashi F, Aronso J, Ecker JR, Shinozaki K. PMID: 12514244.
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Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev. 2002 Dec 01; 16(23):3100-12. Zhao Y, Hull AK, Gupta NR, Goss KA, Alonso J, Ecker JR, Normanly J, Chory J, Celenza JL. PMID: 12464638; PMCID: PMC187496.
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Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics. 2002 Nov; 162(3):1445-56. Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. PMID: 12454087; PMCID: PMC1462317.
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De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. Curr Biol. 2002 Sep 03; 12(17):1462-72. Schroeder DF, Gahrtz M, Maxwell BB, Cook RK, Kan JM, Alonso JM, Ecker JR, Chory J. PMID: 12225661.
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HIV-1 integration in the human genome favors active genes and local hotspots. Cell. 2002 Aug 23; 110(4):521-9. Schröder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F. PMID: 12202041.
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A role for peroxisomes in photomorphogenesis and development of Arabidopsis. Science. 2002 Jul 19; 297(5580):405-9. Hu J, Aguirre M, Peto C, Alonso J, Ecker J, Chory J. PMID: 12130786.
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NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE. Plant Physiol. 2002 Jun; 129(2):530-9. Zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV. PMID: 12068098; PMCID: PMC161670.
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Ethylene biosynthesis and signaling networks. Plant Cell. 2002; 14 Suppl:S131-51. Wang KL, Li H, Ecker JR. PMID: 12045274; PMCID: PMC151252.
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Phototropin-related NPL1 controls chloroplast relocation induced by blue light. Nature. 2001 Apr 19; 410(6831):952-4. Jarillo JA, Gabrys H, Capel J, Alonso JM, Ecker JR, Cashmore AR. PMID: 11309623.
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An Arabidopsis circadian clock component interacts with both CRY1 and phyB. Nature. 2001 Mar 22; 410(6827):487-90. Jarillo JA, Capel J, Tang RH, Yang HQ, Alonso JM, Ecker JR, Cashmore AR. PMID: 11260718.
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The ethylene pathway: a paradigm for plant hormone signaling and interaction. Sci STKE. 2001 Feb 20; 2001(70):re1. Alonso JM, Ecker JR. PMID: 11752640.
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Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature. 2000 Dec 14; 408(6814):816-20. Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW. PMID: 11130712.
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Ethylene signaling: from mutants to molecules. Curr Opin Plant Biol. 2000 Oct; 3(5):353-60. Stepanova AN, Ecker JR. PMID: 11019801.
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National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiol. 2000 Jun; 123(2):423-6. Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. PMID: 10859172; PMCID: PMC1539254.
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Involvement of NRAMP1 from Arabidopsis thaliana in iron transport. Biochem J. 2000 May 01; 347 Pt 3:749-55. Curie C, Alonso JM, Le Jean M, Ecker JR, Briat JF. PMID: 10769179; PMCID: PMC1221012.
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Regulation of differential growth in the apical hook of Arabidopsis. Development. 1999 Aug; 126(16):3661-8. Raz V, Ecker JR. PMID: 10409511.
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A complete BAC-based physical map of the Arabidopsis thaliana genome. Nat Genet. 1999 Jul; 22(3):271-5. Mozo T, Dewar K, Dunn P, Ecker JR, Fischer S, Kloska S, Lehrach H, Marra M, Martienssen R, Meier-Ewert S, Altmann T. PMID: 10391215.
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EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science. 1999 Jun 25; 284(5423):2148-52. Alonso JM, Hirayama T, Roman G, Nourizadeh S, Ecker JR. PMID: 10381874.
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RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transporter, is required for ethylene signaling in Arabidopsis. Cell. 1999 Apr 30; 97(3):383-93. Hirayama T, Kieber JJ, Hirayama N, Kogan M, Guzman P, Nourizadeh S, Alonso JM, Dailey WP, Dancis A, Ecker JR. PMID: 10319818.
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Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Genes Dev. 1998 Dec 01; 12(23):3703-14. Solano R, Stepanova A, Chao Q, Ecker JR. PMID: 9851977; PMCID: PMC317251.
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Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations. Plant Cell. 1998 Nov; 10(11):1779-90. Kwok SF, Solano R, Tsuge T, Chamovitz DA, Ecker JR, Matsui M, Deng XW. PMID: 9811788; PMCID: PMC143959.
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Ethylene gas: perception, signaling and response. Curr Opin Plant Biol. 1998 Oct; 1(5):393-8. Solano R, Ecker JR. PMID: 10066624.
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EIN4 and ERS2 are members of the putative ethylene receptor gene family in Arabidopsis. Plant Cell. 1998 Aug; 10(8):1321-32. Hua J, Sakai H, Nourizadeh S, Chen QG, Bleecker AB, Ecker JR, Meyerowitz EM. PMID: 9707532; PMCID: PMC144061.
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Genome sequencing. Genes blossom from a weed. Nature. 1998 Jan 29; 391(6666):438-9. Ecker JR. PMID: 9461207.
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The ethylene gas signal transduction pathway: a molecular perspective. Annu Rev Genet. 1998; 32:227-54. Johnson PR, Ecker JR. PMID: 9928480.
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[The "Inpatient Vaccination" Project in upper Austria. Technical report]. Wien Med Wochenschr. 1998; 148(8-9):198-203. Süss G, Aigner K, Bolitschek J, Forstner B, Dejaco R, Dorninger HP, Dovjak P, Ecker J, Hochreiter K, Knaus W, Kühn P, Mayer K, Mayrhofer E, Mori M, Schinko H, Wimberger F, Kunze M. PMID: 9677676.
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BRI-ghtening the pathway to steroid hormone signaling events in plants. Cell. 1997 Sep 05; 90(5):825-7. Ecker JR. PMID: 9298893.
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Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell. 1997 Jun 27; 89(7):1133-44. Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker JR. PMID: 9215635.
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Signaling in plants. Proc Natl Acad Sci U S A. 1997 Apr 01; 94(7):2793-5. Mulligan RM, Chory J, Ecker JR. PMID: 9096297; PMCID: PMC34151.
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HOOKLESS1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl. Cell. 1996 Apr 19; 85(2):183-94. Lehman A, Black R, Ecker JR. PMID: 8612271.
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The genome of Arabidopsis thaliana. Proc Natl Acad Sci U S A. 1995 Nov 21; 92(24):10831-5. Goodman HM, Ecker JR, Dean C. PMID: 7479893; PMCID: PMC40525.
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Genetic analysis of a seedling stress response to ethylene in Arabidopsis. Philos Trans R Soc Lond B Biol Sci. 1995 Oct 30; 350(1331):75-81. Roman G, Ecker JR. PMID: 8577853.
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The ethylene signal transduction pathway in plants. Science. 1995 May 05; 268(5211):667-75. Ecker JR. PMID: 7732375.
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Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: five novel mutant loci integrated into a stress response pathway. Genetics. 1995 Mar; 139(3):1393-409. Roman G, Lubarsky B, Kieber JJ, Rothenberg M, Ecker JR. PMID: 7768447; PMCID: PMC1206465.
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Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics. 1994 Jan 01; 19(1):137-44. Bell CJ, Ecker JR. PMID: 8188214.
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Ethylene gas: it's not just for ripening any more! Trends Genet. 1993 Oct; 9(10):356-62. Kieber JJ, Ecker JR. PMID: 8273151.
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CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell. 1993 Feb 12; 72(3):427-41. Kieber JJ, Rothenberg M, Roman G, Feldmann KA, Ecker JR. PMID: 8431946.
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Disease development in ethylene-insensitive Arabidopsis thaliana infected with virulent and avirulent Pseudomonas and Xanthomonas pathogens. Mol Plant Microbe Interact. 1992 Sep-Oct; 5(5):372-8. Bent AF, Innes RW, Ecker JR, Staskawicz BJ. PMID: 1472714.
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Heterodimerization between light-regulated and ubiquitously expressed Arabidopsis GBF bZIP proteins. EMBO J. 1992 Apr; 11(4):1261-73. Schindler U, Menkens AE, Beckmann H, Ecker JR, Cashmore AR. PMID: 1373374; PMCID: PMC556574.
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Genome mapping with anchored clones: theoretical aspects. Genomics. 1991 Dec; 11(4):799-805. Ewens WJ, Bell CJ, Donnelly PJ, Dunn P, Matallana E, Ecker JR. PMID: 1686019.
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p53 mutations, ras mutations, and p53-heat shock 70 protein complexes in human lung carcinoma cell lines. Cancer Res. 1991 Aug 01; 51(15):4090-6. Lehman TA, Bennett WP, Metcalf RA, Welsh JA, Ecker J, Modali RV, Ullrich S, Romano JW, Appella E, Testa JR, et al. PMID: 1855224.
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External fixation of extremity flaps and grafts. Ann Plast Surg. 1991 Feb; 26(2):198-9. Bindiger A, Ecker J, Kuschner S, Sherman R. PMID: 2006850.
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An Arabidopsis thaliana G-box-binding protein similar to the wheat leucine zipper protein identified as HBP-1. Symp Soc Exp Biol. 1991; 45:211-8. Schindler U, Ecker JR, Cashmore AR. PMID: 1843410.
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Exploiting the triple response of Arabidopsis to identify ethylene-related mutants. Plant Cell. 1990 Jun; 2(6):513-23. Guzmán P, Ecker JR. PMID: 2152173; PMCID: PMC159907.
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Laser Doppler monitoring of replants using a small prism probe. Microsurgery. 1989; 10(3):175-7. Lowdon IM, Toby EB, Ecker J, Seaber AV, Urbaniak JR. PMID: 2529414.
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Plant defense genes are regulated by ethylene. Proc Natl Acad Sci U S A. 1987 Aug; 84(15):5202-6. Ecker JR, Davis RW. PMID: 16593860; PMCID: PMC298822.
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Inhibition of gene expression in plant cells by expression of antisense RNA. Proc Natl Acad Sci U S A. 1986 Aug; 83(15):5372-6. Ecker JR, Davis RW. PMID: 16593734; PMCID: PMC386288.
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Varicella zoster virus DNA exists as two isomers. Proc Natl Acad Sci U S A. 1982 Jan; 79(1):156-60. Ecker JR, Hyman RW. PMID: 6275385; PMCID: PMC345681.
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