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Liu, Y., Qingran Li, and Solow, A. (2025). Impacts of reef degradation on commercial fisheries. .
Reigel, A., Easson, C., Apprill, A., Freeman, C., Bartley, M., & Fiore, (2024). Sponge-derived matter is assimilated by coral holobionts. .
Garcia, B. M., Becker, C. C., Weber, L., Swarr, G. J., Soule, M. C. K., Apprill, A., & Kujawinski, E. B. (2023). Advancing Reef Monitoring Techniques through Exometabolomics: Quantification of Labile Dissolved Organic Metabolites on Coral Reefs. .
Taenzer, L., Wankel, S. D., Kapit, J., Pardis, W. A., Herrera, S., Auscavitch, S., . . . Hansel, C. M. (2023). Corals and sponges are hotspots of reactive oxygen species in the deep sea. PNAS Nexus, 2(11), pgad398.
Apprill, A., Sikkel, P. C., & Brown, A. L. (2023). Microbiome dynamics of coral reef and cleanerfish from ecological surveys, in situ manipulations, and laboratory experiments conducted from 2020-2021. .
Caldwell, J. M., Liu, G., Geiger, E., Heron, S. F., Eakin, C. M., De La Cour, J., . . . Donahue, M. J. (2023). Multi-Factor Coral Disease Risk Forecasting for Early Warning and Management. .
Becker, C. C., Weber, L., Zgliczynski, B., Sullivan, C., Sandin, S., Muller, E., . . . Apprill, A. (2023). Microorganisms and dissolved metabolites distinguish Florida’s Coral Reef habitats. PNAS Nexus, 2(9), pgad287.
Jezequel, Y., Aoki, N., Cones, S. F., & Mooney, T. A. (2023). Daytime boat sound does not affect the behavior of wild thorny oysters (
Spondylus americanus
): A field-based study. JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 154(2), 1041-1047.
Greene, A., Moriarty, T., Leggatt, W., Ainsworth, T. D., Donahue, M. J., & Raymundo, L. (2023). Spatial extent of dysbiosis in the branching coral Pocillopora damicornis during an acute disease outbreak. .
Beavers, K. M., Van Buren, E. W., Rossin, A. M., Emery, M. A., Veglia, A. J., Karrick, C. E., . . . Mydlarz, L. D. (2023). Stony coral tissue loss disease induces transcriptional signatures of in situ degradation of dysfunctional Symbiodiniaceae. Nature Communications, 14(1), 2915.
Yang, D., Cai, L., Jamieson, S., & Girdhar, Y. (2023). Robot Goes Fishing: Rapid, High-Resolution Biological Hotspot Mapping in Coral Reefs with Vision-Guided Autonomous Underwater Vehicles. .
Cayemitte, K., Aoki, N., Ferguson, S. R., Mooney, T. A., & Apprill, A. (2023). Ramicrusta invasive alga causes mortality in Caribbean coral larvae. Frontiers in Marine Science, 10, 1158947.
Chen, M., Martin, P., Ren, H., Zhang, R., Samanta, D., Chen, Y. -C., . . . Goodkin, N. F. (2023). Enhanced Monsoon-Driven Upwelling in Southeast Asia During the Little Ice Age. PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY, 38(4).
Becker, C. C., Weber, L., Llopiz, J., Mooney, T. A., & Apprill, A. (2023). Seawater microbial communities within coral reef seawater change over six years in response to disturbance. .
Apprill, A., Girdhar, Y., Mooney, T. A., Hansel, C. M., Long, M. H., Liu, Y., . . . Greene, A. (2023). Toward a New Era of Coral Reef Monitoring. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 57(13), 5117-5124.
Reigel, A., Easson, C., Apprill, A., Freeman, C., Bartley, M., & Fiore, C. (2023). Sponge-derived matter is assimilated by coral holobionts. .
Rosales, S. M., Huebner, L. K., Evans, J. S., Apprill, A., Baker, A. C., Becker, C. C., . . . Voss, J. D. (2023). A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies. ISME Communications, 3(1), 19.
Apprill, A., Kujawinski, E., Muller, E., Sandin, S., Weber, L., Clark, A., . . . Becker, C. C. (2023). Biogeochemistry, metabolomics, and metagenomics of Florida’s Coral Reef from sampling conducted over 15 days in June 2019. .
Girdhar, Y., McGuire, N., Cai, L., Jamieson, S., McCammon, S., Claus, B., . . . Mooney, T. A. (2023). CUREE: A Curious Underwater Robot for Ecosystem Exploration. .
Reigel, A. M., Easson, C. G., Apprill, A., Freeman, C. J., Bartley, M. M., & Fiore, C. L. (2023). Isotopic analysis of ¹³C and ¹⁵N for sponges, coral, and zooxanthellae (family Symbiodiniaceae) used in a ‘pulse-chase’ experiment to examine the uptake of sponge-derived nutrients by the coral holobiont. .
Jézéquel, Y., Aoki, N., & Mooney, T. A. (2023). Acoustic properties and shallow water propagation distances of Caribbean spiny lobster sounds (Panulirus argus). The Journal of the Acoustical Society of America, 153(1), 529-537.
Pereira, A., Soares, M. C., Santos, T., Poças, A., Pérez-Losada, M., Apprill, A., . . . Xavier, R. (2023). Habitat and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus Evelynae. .
McCammon, S., Aoki, N., Mooney, T. A., & Girdhar, Y. (2022). Adaptive Online Sampling of Periodic Processes with Application to Coral Reef Acoustic Abundance Monitoring. In 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) Vol. 00 (pp. 11671-11678). Institute of Electrical and Electronics Engineers (IEEE).
Weber, L., Soule, M. K., Longnecker, K., Becker, C. C., Huntley, N., Kujawinski, E. B., & Apprill, A. (2022). Benthic exometabolites and their ecological significance on threatened Caribbean coral reefs. ISME Communications, 2(1), 101.
Grabb, K. C., Pardis, W. A., Kapit, J., Wankel, S. D., Hayden, E. B., & Hansel, C. M. (2022). Design Optimization of a Submersible Chemiluminescent Sensor (DISCO) for Improved Quantification of Reactive Oxygen Species (ROS) in Surface Waters. SENSORS, 22(17), 18 pages.
Lillis, A., & Mooney, T. A. (2022). Sounds of a changing sea: Temperature drives acoustic output by dominant biological sound-producers in shallow water habitats. FRONTIERS IN MARINE SCIENCE, 9, 11 pages.
Brown, A. L., Sharp, K., & Apprill, A. (2022). Reshuffling of the coral microbiome during dormancy. .
Ferguson, S. R., Jensen, F. H., Hyer, M. D., Noble, A., Apprill, A., & Mooney, T. A. (2022). Ground-truthing daily and lunar patterns of coral reef fish call rates on a US Virgin Island reef. AQUATIC BIOLOGY, 31, 77-87.
Jones, I. T., Gray, M. D., & Mooney, T. A. (2022). Soundscapes as heard by invertebrates and fishes: Particle motion measurements on coral reefs. JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 152(1), 399-415.
Navarro-Martinez, Z. M., Armenteros, M., Espinosa, L., Jose Lake, J., & Apprill, A. (2022). Taxonomic and functional assemblage structure of coral reef fishes from Jardines de la Reina (Caribbean Sea, Cuba). MARINE ECOLOGY PROGRESS SERIES, 690, 113-132.
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